Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1167 ATGGCTGTTGAGGCTTCTGACAAACCAGTTTTGCCCAACAAGTTTGATGATGACGATGATGATAATATGCCATTAACTATAAAACGGTACTCATCGAATAAGAAAAGCCAATTGCATTCAGATGTAAAGAAGTCAATTTCACATAGTCAAGATGGTCATACATACAAGAGGATTTCTGGCGTGCCTTCTTCAAATGGTCAATCTTCTAGCTCTAGTGCACAGAGGGGTAATAATTCCTCATCTGCTAAGGCTTCATCATTAAGATCCCCCCCATCTTCAAGCTCTAATGCACAAAAGGGTAGTGCTGCTCCATCTGCTAAGGCTTCACCATTGAGATCACCCACATCTTCAAGCGCTAGTGCACAGAAGGGTAATGCTGCTCCATCTGCTAAGGTGTCACCCTTGAGGTCACCATCGTCTTCAAGCTCTAGTGCACAGAAGGGTAATACTGTTCCATTGGCTAAGGCTTCGCCTTTGACATCTCCTTTGAGATCTCCTGTAGGTGTCTCAAAACGACCAAATTCACTTGCCAACTCCACTTCTGCCAAGTTGCCTATGGCGAATTCAAAACCTCCTCATCCAGCAGATAAACCAAAGCCTCTTATTAATCAGAAAGTGTCTGGTGATCTTAAAAAGGAAACAAAATCAATCAAAGATTCTTCAAAGAATTATTCTGAAGATTCAGAGGATGAGGAGGATAATAAACCATTGAGTGCTAGGTTGAAGGTGAACAGTAACCACAACAAAGCAACCCCGGTCATCATCAAGAAGTCTGTTGATGATTCTGATTCTGATGATAATGTCCCTTTGTCAACAAAGATAAACTGGAATGCAAACATGGGAACATCTAGTAGTAATTATGACAAATCTGATCAGAAAAAGCCTATTCCGAAAGTTCAGAAAGAGCCACAAAATGGTTCTGGTGCAAGTAATAAAAGACCCATAGATAACAGTAATTCCATGAACTCTTCTGCAAAGAAGTCAAAGATTTCAGAGCCAGCCTTGTCAGTGAAGCCTAAGCAAAGCTCTCTGAAAGTTGAGCCAAAGGTAGAGGATGATGATGATGATGTACCTATTTCCCAGAGAATCAAGAAATCGGCCACATCAGCTAATAAATCATCTTCTATAAAACAGGTGACAAAGATCACTAAAGTTAATAAGGCTAGTACCAAATCTTTTAAGAAACAAGCCAAGAACAAGAAGTTGAAAAAATCAGGAAGTGGTTCAGAATATTCCAAATCCACTAAACTTCTTCCTAGCTCTGGTGATGGCCAGAAAAAATGGACAACTTTGGTTCACAATGGCGTCATTTTCCCACCTCCTTACAAGCCCCATGGGATAAAGATGCGCTACAAGGATCAAGATGTTGATTTAACTCCCGAGCAAGAGGAGGTTGCAACAATGTATGCAGTCATGCTAGATACAGATTACATGCTGAAAGAAAAGTTCAAGGAAAATTTCTGGACTGACTGGCGTAAATTGCTAGGAAAGAATCATGTAATTCAGAATTTGAAAGATTGTGACTTTAGACCAATTTACAACTGGTACCAAAGTGAAAAGGAAAAGAAAAAACAAATGACTGCAGATGAGAAGAAGGCCTTGAAGGAGGAGAAAATAAAACAAGAAGAGAAATACATGTGGGCCATTGTTGATGGTGTGAAAGAGAAGGTTGGTAATTTCAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGGGAGCATCCTAAGATGGGAAAATTGAAAAGGCGCATTCATCCAAGTGATATCACAATTAATATTGGAAAGGATGCTCCAGTTCCTGAATGTCCTATTCCTGGCGAAAAGTGGAAGGAGATAAGGCACGACGATACAGTTACATGGTTAGCCTTTTGGAATGACCCAATCAATCCAAAGTTATTCAAATACGTGTTTCTAGCAGCTAGTAGTGCCCTAAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAAGCCAGGATGTTGAAGGATTATATAGAGAACATTAGGGCTGCTTACACAAAAGATTTTAAGAGTAAAGATATTACTAAGCAGCAAATTGCTGTTGCTACTTATCTTATTGATAAATTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGTACATTAAAAGTGGAGAATGTGACCAGAGAAGCTCCCAACAAACTGAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAGAATACAGTTGAGGTTGAGCTTCCTGTTTATGATGCAATTTTGAAGTTCCAAAAAGATAAGCGCCCCGGTGATGATCTTTTTGACAAGTTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGCCTAACTGCAAAGGTCTTCCGTACATTCAATGCATCTATCACGTTGGATGATATGTTGAATAAGGAAACTAAAGAGGGTGATGTTGTCGAAAAGATTCTTGTTTATCAACATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGCAGTGTTTCAAAATCTCACTCGTCACAAATTGAAAGGTTAACAAACAAGATTGGTGAGCTTAAGGATGTTCTGAAGGAGCTAAAGACAGATTTGGACAGAGCAAGGAAAGAAAAGCCCCCTCTAAAGGGTTCAGATGGAAAGACAAAAAGGAACTTAGCCCCTGAAGCGCTAGAGAAAAAGATCTCTCAAACCAATGCAAAGATTGAGAAAATGGAACGTGAAATGAAGACAAAAGAAGATCTGAAAACTGTGGCATTGGGCACGTCCAAGATAAACTATCTTGACCCTAGGATTACAGTTGCCTGGTGCAAACGGCATGAGGTTCCCATTGAAAAGATATTCAACAAATCGTTGCTGGCAAAATTTACTTGGGCAATGGATGTGGATCCTGAATTCAGATTCTGA 2913 0.3986 MAVEASDKPVLPNKFDDDDDDNMPLTIKRYSSNKKSQLHSDVKKSISHSQDGHTYKRISGVPSSNGQSSSSSAQRGNNSSSAKASSLRSPPSSSSNAQKGSAAPSAKASPLRSPTSSSASAQKGNAAPSAKVSPLRSPSSSSSSAQKGNTVPLAKASPLTSPLRSPVGVSKRPNSLANSTSAKLPMANSKPPHPADKPKPLINQKVSGDLKKETKSIKDSSKNYSEDSEDEEDNKPLSARLKVNSNHNKATPVIIKKSVDDSDSDDNVPLSTKINWNANMGTSSSNYDKSDQKKPIPKVQKEPQNGSGASNKRPIDNSNSMNSSAKKSKISEPALSVKPKQSSLKVEPKVEDDDDDVPISQRIKKSATSANKSSSIKQVTKITKVNKASTKSFKKQAKNKKLKKSGSGSEYSKSTKLLPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKMRYKDQDVDLTPEQEEVATMYAVMLDTDYMLKEKFKENFWTDWRKLLGKNHVIQNLKDCDFRPIYNWYQSEKEKKKQMTADEKKALKEEKIKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKDAPVPECPIPGEKWKEIRHDDTVTWLAFWNDPINPKLFKYVFLAASSALKGQSDKEKYEKARMLKDYIENIRAAYTKDFKSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYDAILKFQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKEGDVVEKILVYQHANKQVAIICNHQRSVSKSHSSQIERLTNKIGELKDVLKELKTDLDRARKEKPPLKGSDGKTKRNLAPEALEKKISQTNAKIEKMEREMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPEFRF* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1167 970 MobiDBLite consensus disorder prediction 10 25 - -
Amo13g1167 970 MobiDBLite consensus disorder prediction 163 186 - -
Amo13g1167 970 MobiDBLite consensus disorder prediction 362 390 - -
Amo13g1167 970 Coils Coil 890 917 - -
Amo13g1167 970 MobiDBLite consensus disorder prediction 344 361 - -
Amo13g1167 970 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 916 934 IPR018521 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 Gene3D Topoisomerase I; Chain A, domain 3 641 789 IPR014711 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 Gene3D DNA Topoisomerase I, domain 2 423 638 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Amo13g1167 970 SMART topeu 567 943 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Amo13g1167 970 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 427 638 IPR008336 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 MobiDBLite consensus disorder prediction 303 338 - -
Amo13g1167 970 MobiDBLite consensus disorder prediction 52 156 - -
Amo13g1167 970 MobiDBLite consensus disorder prediction 206 238 - -
Amo13g1167 970 Gene3D - 790 970 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Amo13g1167 970 PANTHER DNA TOPOISOMERASE I 195 970 - -
Amo13g1167 970 MobiDBLite consensus disorder prediction 1 424 - -
Amo13g1167 970 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 422 639 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Amo13g1167 970 CDD Topoisomer_IB_N 427 639 - -
Amo13g1167 970 MobiDBLite consensus disorder prediction 34 51 - -
Amo13g1167 970 Gene3D - 443 526 IPR013034 GO:0003917|GO:0006265
Amo13g1167 970 Coils Coil 846 873 - -
Amo13g1167 970 PRINTS Eukaryotic DNA topoisomerase I signature 683 702 IPR001631 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 PRINTS Eukaryotic DNA topoisomerase I signature 567 576 IPR001631 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 PRINTS Eukaryotic DNA topoisomerase I signature 786 800 IPR001631 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 PRINTS Eukaryotic DNA topoisomerase I signature 706 720 IPR001631 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 PRINTS Eukaryotic DNA topoisomerase I signature 728 744 IPR001631 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 PRINTS Eukaryotic DNA topoisomerase I signature 923 934 IPR001631 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 MobiDBLite consensus disorder prediction 268 290 - -
Amo13g1167 970 SUPERFAMILY DNA breaking-rejoining enzymes 641 967 IPR011010 GO:0003677
Amo13g1167 970 MobiDBLite consensus disorder prediction 408 424 - -
Amo13g1167 970 CDD Topo_IB_C 647 840 IPR013500 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 PANTHER DNA TOPOISOMERASE I 195 970 - -
Amo13g1167 970 MobiDBLite consensus disorder prediction 867 889 - -
Amo13g1167 970 Pfam C-terminal topoisomerase domain 902 970 IPR025834 -
Amo13g1167 970 Pfam Eukaryotic DNA topoisomerase I, catalytic core 641 866 IPR013500 GO:0003677|GO:0003917|GO:0006265
Amo13g1167 970 Coils Coil 516 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1167 Amo-Chr13 15172145 15180142 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1167 K03163 - gmx:100799837 1249.19