Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1116 ATGGGAGATGAAGGTATCATGAGAGGTGTCACAAAGCAAGCCAACCCTGGAAAGGCTACCATATTAGCTCTTGGCAAGGCATTCCCACACCAACTTGTCATGCAAGAATACTTGGTTGATGGATATTTTAGGGACACTAACTGTGACAATCTTGAGCTCAAACAGAAGCTTAGCAGACTTTGCAAGACAACAACAGTGAAAACAAGGTACGTGGTCATGTCTGAGGAGATACTAAAGAAGTACCCAGAACTTGCGCTTGAAGGCCTTCCAACGGTGAAGCAAAGGCTAGAGATATGTAACAAGGCAGTGACACAAATGGCAATTGAAGCCTCCCAGGTTTGCATCAAGAACTGGGGTAGATCCTTATCTGACATAACACACTTGGTTTATGTCTCATCAAGTGAAGCTAGACTACCTGGTGGTGACCTTTATCTAGCCAGAGGACTAGGACTCAGCCCTGCGACTCAACGAGTCTTGCTCTATTTCGTGGGGTGCTCAGGGGGTGTGGCCGGCCTACGTGTTGCAAAAGACATAGCCGAGAACAACCCTGGTAGCAGAGTGCTTCTAGCTACTTCTGAGACTACAATCATTGGGTTCAAACCACCAAGTGCAGATAGACCCTATGATCTTGTTGGGGTGGCTCTCTTTGGTGATGGCGCTGGTGCAATGATAATTGGCTCAGACCCAATAGAGGGTACTGAGAAGCCTCTCTTTGAGCTTAACACAGCAATTCAAGAGTTTCTGCCAGACACTGAGAAGAAGATTGATGGAAGATTGACTGAAGAGGGGATAAGCTTCAAGTTAGCAAGAGAACTTCCTCAGATAATTGAGGACAATGTGGAAGATTTCTGTGACAAGTTAATGAGTGTTGCTGGATTCCAGAACAAGGAGTATAATAAGCTGTTCTGGGCAGTGCATCCAGGTGGCCCTGCAATCTTAAACCGCATAGAGAAGAGGCTCGACTTGCTGCCAGAGAAGTTGAATGCAAGTAGAAAGGCTTTGATGGATTATGGAAATGCTAGCAGCAACACCATTGTGTATGTGCTGGAATACATGCTAGAAGAGGCCATTAAGATTAGAAAGGATGGTGGAGATGATCCTGAATGGGGCATGTTGCTTGCTTTTGGACCTGGGATCACTTTTGAAGGGATTCTAGCAAGGAACCTGTGTAATTAA 1176 0.4566 MGDEGIMRGVTKQANPGKATILALGKAFPHQLVMQEYLVDGYFRDTNCDNLELKQKLSRLCKTTTVKTRYVVMSEEILKKYPELALEGLPTVKQRLEICNKAVTQMAIEASQVCIKNWGRSLSDITHLVYVSSSEARLPGGDLYLARGLGLSPATQRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPIEGTEKPLFELNTAIQEFLPDTEKKIDGRLTEEGISFKLARELPQIIEDNVEDFCDKLMSVAGFQNKEYNKLFWAVHPGGPAILNRIEKRLDLLPEKLNASRKALMDYGNASSNTIVYVLEYMLEEAIKIRKDGGDDPEWGMLLAFGPGITFEGILARNLCN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1116 391 PANTHER TYPE III POLYKETIDE SYNTHASE B 13 389 - -
Amo13g1116 391 SUPERFAMILY Thiolase-like 216 387 IPR016039 GO:0016746
Amo13g1116 391 PIRSF PKS_III 7 390 IPR011141 GO:0009058|GO:0016747
Amo13g1116 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 389 IPR011141 GO:0009058|GO:0016747
Amo13g1116 391 CDD CHS_like 19 385 - -
Amo13g1116 391 Pfam Chalcone and stilbene synthases, N-terminal domain 11 229 IPR001099 -
Amo13g1116 391 Pfam Chalcone and stilbene synthases, C-terminal domain 239 389 IPR012328 -
Amo13g1116 391 Gene3D - 237 388 IPR016039 GO:0016746
Amo13g1116 391 Gene3D - 4 236 IPR016039 GO:0016746
Amo13g1116 391 SUPERFAMILY Thiolase-like 13 233 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1116 Amo-Chr13 14136094 14137860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1116 87 351 Miscellaneous Gene Families AT4G34250 24.324 5.13e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1116 - - vun:114168705 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1116 13 14136094 14137860 Amo13g1116 13 14136094 14137860 ECH