Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1096 ATGGTCCCACCGGCGGTGCAATCGCCGAACCCACAACTAACCCAGCAGTTCCTAAGCTCTGTCCTCTCGCAGCGTGGCCCCGCCGCCCTGCCTTACTCCGAAGACACAAAGTGGCTGATCCGGCAGCACCTCGTCGCCGTCACCACCACGTACCCCTCCCTTGAGCCTAAAACCGCCACCTTCACACACAACGATGGCCGCTCCGTCAATCTCCTCCAAGCCGACGGCACAATCCCGATGTCGTTTCAGGGCGTCACTTACAACATCCCCGTTCTCATCTGGCTCATGGAATCTTACCCTCGCCACGCGCCCTGCGTCTACGTTAACCCCACGCGCGACATGATCATCAAGCGCCCCCACCCTCACGTTAATCCCTCTGGCCTCGTCTCCGTCCCTTATTTGCAGAATTGGGTTTACCCTAGCTCCAATCTCGTCGATCTCGTTCGCGATTTGGGTGTTATCTTTGGCCGCGATCCTCCTCTTTATTCCCAGCGTAGGAACCCTCAACCTCCGCCACCTCAAAACCTGAATCCCAATTCAAATTTCGGATCTTTATCGAGTAATTCGGGGAATTCCCAATCTGGTTATGTCCAGCATCATCAGCATCACCAGCACCCTGCTCCTGCTTCTCCTGCGAGGAATAATTATCCTCCATCACCTTATGGAAGCTTTGGTGGTGGTTCTTCTAGGGTTCAGAATTTGCCCCACACTGAGGATCCAACTGAGGTTTTTAAGAGGAATGCGGTTAATAAGATTGTGGAGATGGTTCATGGTGATGTTACTGCTTTGAGGAAGACCAGGGAGGCTGAGATGGAGGGTTTGTTTAGCTTGCAGGGTGTGTTGAAGCAGAGGGAGGAGGTTCTCAATAAGGGTTTGAAGGAGATGCAGGAGGAGATGGAGGGTTTGGAGCAGCAGTTGCAGATGGTTTTGATGAACACTGATGTTCTTGAAGGGTGGTTGAGGGATAACCAAGGGATGAGGTTGGGTAGTTTGGAGAATGCCGAGGATGCTTTTGATTGTGTGGATGTGTTATCTAAGCAGATGCTAGATTGCACTGCTTCGGATTTGGCTATTGAGGACACACTTTATGCATTGGATAAGGCTGTTCAGGTTGGTTCCGTGCCTTTCGATCAGTACTTGAGGAGCGTGAGGGCGCTGTCGAGAGAGCAGTTCTTTCACCGGGCGACAGCCGCAAAAGTTAGAGCTGCTCAGTTGCAGGCTCAGGTTGCTAATATGGCTGTTAGGACACACCATTATGGCAGTTGA 1266 0.5213 MVPPAVQSPNPQLTQQFLSSVLSQRGPAALPYSEDTKWLIRQHLVAVTTTYPSLEPKTATFTHNDGRSVNLLQADGTIPMSFQGVTYNIPVLIWLMESYPRHAPCVYVNPTRDMIIKRPHPHVNPSGLVSVPYLQNWVYPSSNLVDLVRDLGVIFGRDPPLYSQRRNPQPPPPQNLNPNSNFGSLSSNSGNSQSGYVQHHQHHQHPAPASPARNNYPPSPYGSFGGGSSRVQNLPHTEDPTEVFKRNAVNKIVEMVHGDVTALRKTREAEMEGLFSLQGVLKQREEVLNKGLKEMQEEMEGLEQQLQMVLMNTDVLEGWLRDNQGMRLGSLENAEDAFDCVDVLSKQMLDCTASDLAIEDTLYALDKAVQVGSVPFDQYLRSVRALSREQFFHRATAAKVRAAQLQAQVANMAVRTHHYGS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1096 421 MobiDBLite consensus disorder prediction 178 200 - -
Amo13g1096 421 Gene3D Ubiquitin Conjugating Enzyme 5 162 IPR016135 -
Amo13g1096 421 ProSiteProfiles Steadiness box (SB) domain profile. 342 410 IPR017916 -
Amo13g1096 421 SUPERFAMILY Endosomal sorting complex assembly domain 342 402 IPR037202 -
Amo13g1096 421 PANTHER PROTEIN ELC 8 416 - -
Amo13g1096 421 Coils Coil 285 312 - -
Amo13g1096 421 MobiDBLite consensus disorder prediction 221 236 - -
Amo13g1096 421 MobiDBLite consensus disorder prediction 160 241 - -
Amo13g1096 421 Pfam UEV domain 41 161 IPR008883 GO:0015031|GO:0036211
Amo13g1096 421 SUPERFAMILY UBC-like 27 161 IPR016135 -
Amo13g1096 421 Pfam Vps23 core domain 337 399 IPR017916 -
Amo13g1096 421 Gene3D - 343 403 - -
Amo13g1096 421 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 8 416 - -
Amo13g1096 421 ProSiteProfiles UEV domain profile. 21 165 IPR008883 GO:0015031|GO:0036211
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1096 Amo-Chr13 13903880 13907143 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1096 K12183 - gmx:100798165 588.186