Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0987 AAAAAGAAACCCTATCTTAAACTCTTTCCATTGCACATTAGAGAGAGTTTTGGAGGGAAAACAGAAAGAGCGGCAAAAGCGAAAGAAAAAATGGCGGAAGAAGAGTACGATGATGATGTCGAAGAAGAGTTCTCCGTTTGGAAGAGGAACACGCCATTGTTGTACGATCTTGTCATTTCGCACCCTCTCCCATGGCCTTCTCTCACTGTTCACTGGCTCCATTCTTCTCCACAACCCCATTCTCATCCTTCCTTCAATCTCCACAAGATCCTTTACGCAACTCACACTTCAAATTCCGAACCGAACTACCTCATCCTCGCCAATGTTGCTCTTCCTGCCAACCCATCACAGCCTGTCGCTGCTGCTGTTGACGCTGAAAACCCGGTTCTGCCCAAGGTGGAGGTTACCCAAAGGATTATGGTTGATGGGGAGGTGAATAGGGCGAGGAGTATGCCCCAGAACCCTAGTGTTGTTGCTTCCAAGACTTGTGGTTCTGAGGTTTATGTGTTTGATGTTGAGAAGCAGCATGGAAAGGAACAAGGTAGTGGTTGTGATCCTGATTTGAGGTTGAGGGGTCATGACAAAGAAGGGTATGGTTTGTCTTGGAGCCCTTTTAAGAAAGGCTATCTTTTGAGTGGCTCCCATGACTCAAAGATTTGCGTGTGGGATGTGTTAGCTGCGGATCAAGATAATGTGCTTGATGCGATCCATGTTTTTGAGGCACATGATGGCGTGGTTGGGGATGTATCCTGGCATTCAAAGCACGAGAGTTTATTTGGCTCTGTTGGAGATGATTGCAAATTAATCATTTGGGACTTGAGGACAAATAAGGCCCAGCAATCAGTCAAGGCACATGAGAATGAGGTGAACTTTATTTCTTTCAATCCATATAATGAATGGATTGTAGCTACAGCATCTTCAGACACCACCATTGCCCTCTTTGATACAAGGAAACTGGCGGAGCCACTGCATGTTTTGAGTAGCCACACCGATGAGGTGTACCAGGTGGAGTGGGATCCTAATCATGAGACCGTGTTGGCATCTTCAGGTGCTGACAGAAGGCTGAACGTTTGGGACCTTAGCAGAGTCGGGGATGAGCAGAATGAAGGGGATGGTGATGGTGGCCCTCCTGAGCTACTCTTCTCTCATGGTGGTCACAAGGGGAAGATATCGGACTTTTCGTGGAACAAGAATCAACCATGGGTTATCTCAAGTGTGGCTGAGGACAATTCTTTCCATGTGTGGCAAATGGCTGAGAATATATACAATGAAGATGGTGATGACGAAGATATCTGGACAGCTGATGGTCAAAACTAA 1317 0.4647 KKKPYLKLFPLHIRESFGGKTERAAKAKEKMAEEEYDDDVEEEFSVWKRNTPLLYDLVISHPLPWPSLTVHWLHSSPQPHSHPSFNLHKILYATHTSNSEPNYLILANVALPANPSQPVAAAVDAENPVLPKVEVTQRIMVDGEVNRARSMPQNPSVVASKTCGSEVYVFDVEKQHGKEQGSGCDPDLRLRGHDKEGYGLSWSPFKKGYLLSGSHDSKICVWDVLAADQDNVLDAIHVFEAHDGVVGDVSWHSKHESLFGSVGDDCKLIIWDLRTNKAQQSVKAHENEVNFISFNPYNEWIVATASSDTTIALFDTRKLAEPLHVLSSHTDEVYQVEWDPNHETVLASSGADRRLNVWDLSRVGDEQNEGDGDGGPPELLFSHGGHKGKISDFSWNKNQPWVISSVAEDNSFHVWQMAENIYNEDGDDEDIWTADGQN* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0987 438 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 32 430 - -
Amo13g0987 438 SMART WD40_4 376 416 IPR001680 GO:0005515
Amo13g0987 438 SMART WD40_4 183 223 IPR001680 GO:0005515
Amo13g0987 438 SMART WD40_4 319 359 IPR001680 GO:0005515
Amo13g0987 438 SMART WD40_4 275 315 IPR001680 GO:0005515
Amo13g0987 438 SMART WD40_4 232 272 IPR001680 GO:0005515
Amo13g0987 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 281 IPR001680 GO:0005515
Amo13g0987 438 SUPERFAMILY WD40 repeat-like 142 420 IPR036322 GO:0005515
Amo13g0987 438 PANTHER WD40 REPEAT FAMILY 32 430 - -
Amo13g0987 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 361 IPR001680 GO:0005515
Amo13g0987 438 Pfam WD domain, G-beta repeat 236 272 IPR001680 GO:0005515
Amo13g0987 438 Pfam WD domain, G-beta repeat 321 359 IPR001680 GO:0005515
Amo13g0987 438 Pfam WD domain, G-beta repeat 278 315 IPR001680 GO:0005515
Amo13g0987 438 Pfam WD domain, G-beta repeat 380 415 IPR001680 GO:0005515
Amo13g0987 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 224 IPR001680 GO:0005515
Amo13g0987 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 361 - -
Amo13g0987 438 ProSitePatterns Trp-Asp (WD) repeats signature. 210 224 IPR019775 -
Amo13g0987 438 ProSitePatterns Trp-Asp (WD) repeats signature. 346 360 IPR019775 -
Amo13g0987 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 224 - -
Amo13g0987 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 317 IPR001680 GO:0005515
Amo13g0987 438 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 42 112 IPR022052 -
Amo13g0987 438 Gene3D - 21 434 IPR015943 GO:0005515
Amo13g0987 438 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Amo13g0987 438 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Amo13g0987 438 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0987 Amo-Chr13 12303666 12306212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0987 207 428 Miscellaneous Gene Families AT5G08390 25.225 3.19e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0987 K10752 - gmx:100791834 644.425