Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0979 ATGGGTTTTTTTGGCACTATATTGGGGTTTTTCGGATTTGGTGTTGGGATCACCATTGGTCTTGTAGCTGGCTATTTTCTCTTCATTTACTTTCAACCCACTGATGTTAAGGATCCTGAAATCAAGCCATTGGTGGAGCAAGACGCAGAAACCTTGCAGAAAATGTTTCCTGAGATTCCACTTTGGATTAAAAATCCAGACTTTGATAGGATTGATTGGCTGAACAAGTTTATTGAATACATGTGGCCTTACCTTGACAAGGCAATTTGCAAGACTGCGAAGAATATTGCAAAGCCCATAATTGCTGAGCAGATTCCGAAATACAAAATTGATTCTGTTGAGTTTGAAACTCTAACACTGGGATGCCTGCCCCCAACTTTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAGGAGTTGATTATGGAGCCTTCCATAAAGTGGGCTGGAAATCCTAATGTCACAATTGGTGTAAAGGCATTTGGATTCAAAGCAACCATTCAGGTTGTTGATTTGCAAGTATTTCTCATACCTCGAATTACTTTGAAACCATTGGTTCCAAGCTTTCCTTGCTTTGCCAACATACATGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTTTTGGGGGCTGATCTTATGTCCATTCCTGGTGCCTATAGGCTTGTTCAGGAGATTATCAAAGATCAAGTTGCAAATATGTATCTGTGGCCCAAAACCCTTGATGTTCAAGTATTAGATCCATCAAAAGCCATGAGGAGACCTGTTGGGATTTTACATGTAAAGGTTGTGAGAGCAATCAAGTTAAGGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGATCACTGATGATAAGGCGCCGTCGAAAAAGACTACTGTGAAGCACAAGAACTTGAATCCTGAATGGAACGAAGATTTTAATATTACTGTTAAAGATCCTGAGACCCAGGTTCTGGAAGTTGATGTTTTTGATTGGGAGCAGGTTGGGAAACATGACAAGATGGGTATCAATGTGATCCCTTTAAAAGAACTTTCCCCTGAAGAGCCAAAAGAATTCACTCTTGACCTCCTAAAAACTTTGGATCCGAACGACGTTCAGAATGAGAAGTCGCGTGGGCAGATTGTTTTGGAATTGACCTATAAACCTTTCAAGGAGGAGGACATAGGCAAGAGTTTTGACGAGACACAGACATTACCGAAAGCTCCTGAAAATACTCCTGCTGGTGGAGGTCTGCTTGTTGTCATAGTCCATGAAGCTCAAGATGTTGAAGGAAAGTACCATACTAATCCTCATGTTCGGCTTTTATTCAGAGGAGAGGAGAAAAAGACTAAGCGAATTAAAAAGAACAGAGATCCAAGATGGGAAGATGAGTTCACATTTATGCTGGATCACCCTCCCACTCATGACAAATTGCATGTGGAGGTTGTTAGCACTTCTGCAAGAAACCTGCTCCATCAAAAGGAATCACTGGGATATGTTGAAATCAATCTTGGAGATGTTGTTTCTAACAAAAGAATCAATGAGAAGTTCCATCTCATAGACTCCAAGAATGGTCGCATTCAGATAGAGTTGCAGTGGAGAACTTCATAG 1614 0.4083 MGFFGTILGFFGFGVGITIGLVAGYFLFIYFQPTDVKDPEIKPLVEQDAETLQKMFPEIPLWIKNPDFDRIDWLNKFIEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGCLPPTFQGMKVYVTDEKELIMEPSIKWAGNPNVTIGVKAFGFKATIQVVDLQVFLIPRITLKPLVPSFPCFANIHVSLMEKPHVDFGLKLLGADLMSIPGAYRLVQEIIKDQVANMYLWPKTLDVQVLDPSKAMRRPVGILHVKVVRAIKLRKKDLLGASDPYVKLKITDDKAPSKKTTVKHKNLNPEWNEDFNITVKDPETQVLEVDVFDWEQVGKHDKMGINVIPLKELSPEEPKEFTLDLLKTLDPNDVQNEKSRGQIVLELTYKPFKEEDIGKSFDETQTLPKAPENTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLLFRGEEKKTKRIKKNRDPRWEDEFTFMLDHPPTHDKLHVEVVSTSARNLLHQKESLGYVEINLGDVVSNKRINEKFHLIDSKNGRIQIELQWRTS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0979 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Amo13g0979 537 SMART C2_3c 419 517 IPR000008 -
Amo13g0979 537 SMART C2_3c 261 361 IPR000008 -
Amo13g0979 537 Gene3D C2 domain 256 411 IPR035892 -
Amo13g0979 537 ProSiteProfiles C2 domain profile. 401 518 IPR000008 -
Amo13g0979 537 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Amo13g0979 537 CDD C2 262 364 - -
Amo13g0979 537 CDD C2 420 520 - -
Amo13g0979 537 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
Amo13g0979 537 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
Amo13g0979 537 Gene3D C2 domain 419 536 IPR035892 -
Amo13g0979 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Amo13g0979 537 Pfam C2 domain 260 361 IPR000008 -
Amo13g0979 537 Pfam C2 domain 419 520 IPR000008 -
Amo13g0979 537 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Amo13g0979 537 PRINTS C2 domain signature 277 289 IPR000008 -
Amo13g0979 537 PRINTS C2 domain signature 304 317 IPR000008 -
Amo13g0979 537 PRINTS C2 domain signature 326 334 IPR000008 -
Amo13g0979 537 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0979 Amo-Chr13 12207381 12212674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0979 258 516 Lipid Metabolism Gene Families AT3G61300 28.520 5.27e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0979 - - gmx:100781189 966.066