Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0969 ATGGATCTCTTCTCTTCCTCCCACTCCACTCTCATTATCTTCTTACTCCTCACACTCACACCTCAACAAGGTACTGTTATGGGTGCTACCTTCACATTCGTCAACAGGTGCGACTACACTGTCTGGCCCGGCATTCTCGCAAATGCCGGTAGCCCAGCACTCGACAGCACCGGTTTCGAGCTTCCAAAGGCCACTTCTAGAACCTTCCAAGCTCCCACCGGTTGGTCCGGTCGCTTCTGGGGCAGAACTGGCTGCAACTTCGACGGATCCGGCTCCGGTTCATGCCTCACCGGAGACTGCGGCTCCGGCCAAATGGAGTGCAACGGCGCCGGTGCAGCCCCTCCCGCCACCCTCGCCGAGTTCACCCTCGGCACCGGCGGTCAGGACTTCTATGACGTGAGCCTGGTGGACGGTTACAACCTTCCGATGATCGTTGAAGGCACTGGCGGGTCGGGGCAGTGCGCGTCGACGGGTTGCACTTCGGATCTGAACCAGCAGTGCCCTTCGGAGCTTAAAGCGTTGGATGGAAGCGCGTGTAAGAGCGCGTGTGAGGCTTTTGGGAGCCCTGAGTACTGTTGCAGTGGCGCGTATGGGTCACCTTCCACTTGTAGGCCTTCTATTTACTCGGAGATGTTCAAGGCTGCTTGCCCTCGATCGTATAGCTACGCATACGATGATGCTACGAGTACTTTTACGTGTACGGGTGCTGATTATACGGTTACCTTTTGTCCATCCTCTCCAAGTCAGAAATCTTCAAGAGACACAACACCAACAATAGGGTCAGGCATAGGAACACCAATGACACCAACAACGCCCATGGCTTCAGGAACTGGGATTGGAACACAAACAGGAACCGGAACTGGAATCGGAACCGGATCAACAGGTTCCCAAGAAGGTGCAGGTTTTGCATACACCGGTGCTGGTGTTGGTGTTGACCCTGGCCTTGGTTATTCATCATCAGTTACTGGTTCTGGTTCGGGTTCAGGTTCCGGCGAAGCCATGCTTGCAGATGGTTCATATTTAGCTGGTTTAGCCATGGGAGACTCACCTAGGAGTACAACATTTTCCTCTGCTTTTCTCTATCCTGCAAGCTTTTTTCTTATTCTATCTTGTTATTTCCTTTAG 1125 0.5342 MDLFSSSHSTLIIFLLLTLTPQQGTVMGATFTFVNRCDYTVWPGILANAGSPALDSTGFELPKATSRTFQAPTGWSGRFWGRTGCNFDGSGSGSCLTGDCGSGQMECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGQCASTGCTSDLNQQCPSELKALDGSACKSACEAFGSPEYCCSGAYGSPSTCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSSRDTTPTIGSGIGTPMTPTTPMASGTGIGTQTGTGTGIGTGSTGSQEGAGFAYTGAGVGVDPGLGYSSSVTGSGSGSGSGEAMLADGSYLAGLAMGDSPRSTTFSSAFLYPASFFLILSCYFL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0969 374 PANTHER OS03G0233200 PROTEIN 9 270 IPR001938 -
Amo13g0969 374 ProSitePatterns Thaumatin family signature. 91 107 IPR017949 -
Amo13g0969 374 ProSiteProfiles Thaumatin family profile. 28 244 IPR001938 -
Amo13g0969 374 SUPERFAMILY Osmotin, thaumatin-like protein 29 245 IPR037176 -
Amo13g0969 374 Pfam Thaumatin family 35 244 IPR001938 -
Amo13g0969 374 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 9 270 - -
Amo13g0969 374 CDD TLP-PA 30 243 - -
Amo13g0969 374 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Amo13g0969 374 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Amo13g0969 374 PRINTS Pathogenesis-related protein signature 91 120 IPR001938 -
Amo13g0969 374 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Amo13g0969 374 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Amo13g0969 374 SMART tha2 31 244 IPR001938 -
Amo13g0969 374 Gene3D Thaumatin 29 244 IPR037176 -
Amo13g0969 374 Coils Coil 373 374 - -
Amo13g0969 374 MobiDBLite consensus disorder prediction 244 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0969 Amo-Chr13 12038116 12040865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0969 12 252 Receptor kinase-like Gene Family AT5G38280 49.004 1.08e-79 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0969 - - ahf:112789067 665.996