Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0957 ATGCAGGACATTATTCCATTCTTTATCCTTTTAGTCCTCTTCGTAGGGACTTGTTTGGTTTCTCCTTTACATGATGGACCCATGTATGATTCCACTGCTTACACTGAGTGCAAAGAGGAACCTGAGAAGCCACTTTACAATGGTGGAGTTTTTGAGAGTCAGCCACAATCTGGGGGAGTTCAACATGCCATTGCCTTGTATGCAGTTGATGGTCCTTCATTCATTCTCCATAGCCTTACACAAGACACTATCTACTCTTTCTCCGTTTGGGTGAGAATTGAAGGTTCAAGTTCAGGTCTAATAAGGGCAAGCTTGCAAACAGAAAATGAAACCTATGATTGCATAGGAACAGTTTTGGCCAAGAGTGGATGCTGGTCATTTCTTAAAGGTGGATTTCTTCTTAATTGGCCTTCTACTTCATCTATGCTCTTCTTTCAGAACACTGATGGTAAAGATATAAATATAGAGTTAGCTAGCCCATCACTGCAGCCATTTACTAAGCAGCAATGGAGATTCAATCAAGAGTACCTAATCAACACTCATCGAAAGCAAGCCGTAACGATTCATGTGTCAGATAGCAATGGGAAGAGAATGCAAGGAGCCACCATCAATATAGAGCAGATCTCAAAGGACTTCCCTTTTGGATCTGCAATAGCCAAGACCATTCTTGGCAACATGCCCTATCAGAATTGGTTTGTGAAAAGATTCAATGCTGCAGTGTTTGAAAATGAGCTAAAATGGTATGCCACAGAACCTGATCAAGGCAAGGTCAATTATACAATTTCAGATCAAATGCTACAATTTGTTAGAGCAAACAAAATCATAGCTAGAGGTCACAACATCTTCTGGGAAGATCCTAAATACACGCCTGCATGGGCACGAAACCTTACCGGAATTCAATTACAAGCTGCTGTTGATTCAAGAATTCAGAGTCTTATGAACCAATACAGAGAAGAATTCATACATTGGGATGTCAGCAATGAAATGCTTCACTTTGATTTCTATGAGAAAAGGCTTGGACCTGATGCCACATTGCATTTCTTTGAAACTGCACATAAATCTGATCCATTAGCAACCCTTTTCATGAATGACTTCAATGTGGTGGAAACCTGCAGTGATGTGAATTCAACTGTTGACACATATATCTCAAGGCTCAGAGAATTGCAACAAAATGGTGTATTCATGGATGGAATTGGCCTAGAAAGTCACTTCACAGTTCCAAATCTTCCCCTTATGAGAGCCATCATAGACAAGTTGGCAACACTCAACCTTCCCATTTGGCTAACTGAGGTTGATATTAGCAAGACACTTGATAAAGATACTCAGGCTATTTATTTGGAACAAGTGTTGAGGGAAGGCTTCTCTCATCCTTCAGTGAATGGAATAATGCTATGGACTGCACTTCATCCACAAGGATGCTACCAAATGTGTCTCACAGACAATGATTTCAGAAACCTTCCATCAGGTGATGTTGTGGACAAGCTTCTTCAAGAATGGCAAACTGGTCATGCAGAAGGAGTGACAGATGAACATGGTTCTTACAGCATTTTTGGATTCTTAGGAGAATATAGAGTCACTGCCACATATGGTAACAAAACTGCAGATACAACTTTTTCTCTCTGTGGAGGTAGAGAAACTAAACATGTTACTATCAGTATTAGACTTTGA 1668 0.4029 MQDIIPFFILLVLFVGTCLVSPLHDGPMYDSTAYTECKEEPEKPLYNGGVFESQPQSGGVQHAIALYAVDGPSFILHSLTQDTIYSFSVWVRIEGSSSGLIRASLQTENETYDCIGTVLAKSGCWSFLKGGFLLNWPSTSSMLFFQNTDGKDINIELASPSLQPFTKQQWRFNQEYLINTHRKQAVTIHVSDSNGKRMQGATINIEQISKDFPFGSAIAKTILGNMPYQNWFVKRFNAAVFENELKWYATEPDQGKVNYTISDQMLQFVRANKIIARGHNIFWEDPKYTPAWARNLTGIQLQAAVDSRIQSLMNQYREEFIHWDVSNEMLHFDFYEKRLGPDATLHFFETAHKSDPLATLFMNDFNVVETCSDVNSTVDTYISRLRELQQNGVFMDGIGLESHFTVPNLPLMRAIIDKLATLNLPIWLTEVDISKTLDKDTQAIYLEQVLREGFSHPSVNGIMLWTALHPQGCYQMCLTDNDFRNLPSGDVVDKLLQEWQTGHAEGVTDEHGSYSIFGFLGEYRVTATYGNKTADTTFSLCGGRETKHVTISIRL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0957 555 PRINTS Glycosyl hydrolase family 10 signature 276 288 IPR001000 GO:0004553|GO:0005975
Amo13g0957 555 PRINTS Glycosyl hydrolase family 10 signature 320 331 IPR001000 GO:0004553|GO:0005975
Amo13g0957 555 PRINTS Glycosyl hydrolase family 10 signature 358 369 IPR001000 GO:0004553|GO:0005975
Amo13g0957 555 PRINTS Glycosyl hydrolase family 10 signature 391 403 IPR001000 GO:0004553|GO:0005975
Amo13g0957 555 SUPERFAMILY (Trans)glycosidases 197 502 IPR017853 -
Amo13g0957 555 Gene3D Glycosidases 200 510 - -
Amo13g0957 555 SMART glyco_10 245 496 IPR001000 GO:0004553|GO:0005975
Amo13g0957 555 SUPERFAMILY Galactose-binding domain-like 69 150 IPR008979 -
Amo13g0957 555 Pfam Glycosyl hydrolase family 10 207 466 IPR001000 GO:0004553|GO:0005975
Amo13g0957 555 PANTHER GLYCOSYL HYDROLASE 9 552 IPR044846 GO:0004553|GO:0005975
Amo13g0957 555 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 9 552 - -
Amo13g0957 555 Gene3D - 56 157 - -
Amo13g0957 555 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 199 495 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0957 Amo-Chr13 11859378 11863190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0957 25 553 Glycoside Hydrolase AT4G38650 67.228 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0957 - - gmx:100806005 896.73