Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0905 ATGAGAAGAGGATTTTTTGGAGCTGCCAATAACCGTAACTGCTTCACTAAGCCGCCACTCATTTCCAGCTCCGTCTTCACTCTTCTCAAACCCTTCTGCGCCATCGCGTCTTCCTCCGCCAGATCTCTTCCTACTTCCGTCGCTTCCGCCGCCGCGATGCCTGGTTCTGACTCGCCCAACCGGGAGTGGCCGGCGAAGCGCGTGAGGGACACTTTCTTTAAGTTCTTCGAAGAAAAGCGCCATGTCTACTGGCGGTCCAGTCCCGTTGTTCCATTCAATGACCCTACCCTATTGTTCGCCAACGCTGGTATGAACCAGTTCAAGCCAATATTTTTGGGGACTGTGGATCCCAACACTGCCTTGAGCAAGCTCACTCGTGCCTATAATACCCAAAAGTGTATTCGTGCTGGTGGTAAACACAATGACCTTGACGATGTAGGGAAAGATACCTACCACCACACATTCTTTGAAATGCTGGGAAATTGGTCGTTTGGAGATTACTTCAAAGAAGAAGCTATTACTTGGGCATGGGAACTTCTAACAAAAGTCTATAAATTACCATCAGATCGCATTTATGCTACATATTTTGGTGGTGACGAAAACGCTGGTCTTGTCCCTGATAATGAGGCTAGAGATATATGGCTAAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGAGACTGGCCCTTGTGGACCTTGCACCGAAGTACATTTTGATCGAATTGGAAACCGTGAAGCTTCATCATTAGTTAATAATGATGATCCTACATTAATTGAGATATGGAACCTTGTCTTTATTCAGTATAATAGGGAGGCCGATGCTTCTCTTAAACCTCTTCCAGCAAAGCATGTTGATACCGGCTTGGGTTTTGAACGTTTGACATCTGTACTACAAAACAAAATGAGCAATTATGACACTGATGTCTTCTTGCCAATCTTTGATGCTATTCAGTTGGAAACTGGTGCTAGGCCATATTCTGGTAAGGTTGGGCCAGATGATGCAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGACCACATCAGAACTCTATCATTTGCTATTGCTGATGGGTCTCGTCCTGGCAACGATGGCCGGGAGTATGTTCTTAGGCGTATTCTCCGTCGTGCAGTTCGGTATGGCCGTGAAGTTCTAAAAGCTAAGGAGGGGTTTTTTAACAGGCTTGTAAGTGTTGTGGTCAAGGTGATGGGCGATGTTTTCCCTGAGCTAAAACAACAGGAGGCACACATCAGGGATGTAATTGAAGAGGAGGAGGAAAGTTTTGGCAGAACCTTAATTAAGGGGATTGAGAAATTTAATAATGCTGTTCAACATGTTCAGGACAAACAGCTGAGTGGAGAGGAAGCATTTGTCCTCTGGGATACATATGGGTTCCCAATAGATCTCACTAAGCTGATGGCTGAAGAAAAAGGTTTAACTGTTGATGAAGATGGATATAATAAGGCCTTGGAGGCTGCAAGAGAGCGATCAAGGAATGCTCAAGCAACGCAAGCAGGTGGTGCCATTATCATGGATGCTGATGCTACCTCAGTGTTGCATAGAAGGGGCATTGCTCCAACTGATGATAGCTTCAAATATGTTTGGTTCAAGGACCACGAGAGCGTGGTGAAAGCAATATACACTGGTTCTGAGTTTGTTGAATCTGTTGAAACTGATGGTGACATTGGTGTCGTTCTTGAATCTACAAGTTTCTATGCTGAACAAGGTGGTCAGATTTTCGACACTGGATCACTGGAGGGTCCACATGCATCATTCAAAGTTCACAACGTACAAGTATTTGGAGGTTTTGTTCTCCACATTGGTTCTAATGGGAATGGAATCTCTGTTGGTGACAAAGTAGTATGCAAGGTTGATTATGGTAGGCGTTCCCTTATAGCCCCCAACCATACCTGCACACACATGTTAAACTTTGCTCTTAGGGAAGTACTTGGGGATCATGTTGACCAGAAAGGATCCATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATCCCGACAATTTGAGGAAAATCGAATCAATTGTTAATGAGCAAATTAGGGATGAATTAGATGTCAATGCAAAGGAGGCAACTCTTGCTGAAGCCAAGCGTATTAATGGCTTACGAGCTGTGTTTGGAGAAGTTTATCCTGATCCCGTAAGAGTTGTATCAATCGGAGAAAAAGTTGAGGATCTCCTTGCCGACCCTGAAAATAAAAAATGGTTATCTATTTCATCAGAATTATGTGGTGGCACCCATATATCAAACACAAGAGAGGCCAAAGCTTTTGCTCTTTTATCTGAGGAGGGAATTGCAAAGGGAATACGCAGAATAACAGCTGTGACAACTGATCGTGCTTCTGATGCAATAAGAGTTGCAAATGAATTTGAGCAACACGTAGACAATGCAGCCAAGTTAGAGGGAAGTTCACTGGAAGAGAAAGTTTTGTACCTGAAAAGCAATGTGGAAACCTTATCTATTCCTGCAGCCAAGAAAGCTGACATAAAGAACAAGATAGTCCAACTTCAGGATCGGGTGAGAAAAGCACAAAAGCAAATTGCTGAAGAAAATAAACGTAAAGCTGTGACGATTACAGCTGAGAAGGCTGAACTTGCTGCATCAGATGGGAAAACATTTTGTGTGTCCCAGGTTGAAGTTGGTCTGGATGTAAACGCAGTGCGTGAAGCAGTTACAAAAGTCATGGAGCAGAAGGGTATATCTGTTATGGTATTTAGCACTGACAAGTCTACAAACAAGGCTGTAGTTTGTGCTGGCGTGCCGGAGAAAGGTGATAAAGGCAAGCTGGATGTTACAGAGTGGTTAACCAACGCTTTAGGGCCTCTGAAAGGGAGATGCGGTAAAGGAAAAGGTGGTCTTGCAACAGGCCAGGGTACAGATGCATCACATGTAAGTGAGGCTATGGATCTTGCAACATCATTTGCATCAATGAAATTGACTTAA 3012 0.4389 MRRGFFGAANNRNCFTKPPLISSSVFTLLKPFCAIASSSARSLPTSVASAAAMPGSDSPNREWPAKRVRDTFFKFFEEKRHVYWRSSPVVPFNDPTLLFANAGMNQFKPIFLGTVDPNTALSKLTRAYNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAITWAWELLTKVYKLPSDRIYATYFGGDENAGLVPDNEARDIWLKFLPPGRVLPFGCKDNFWEMGETGPCGPCTEVHFDRIGNREASSLVNNDDPTLIEIWNLVFIQYNREADASLKPLPAKHVDTGLGFERLTSVLQNKMSNYDTDVFLPIFDAIQLETGARPYSGKVGPDDADKVDMAYRVVADHIRTLSFAIADGSRPGNDGREYVLRRILRRAVRYGREVLKAKEGFFNRLVSVVVKVMGDVFPELKQQEAHIRDVIEEEEESFGRTLIKGIEKFNNAVQHVQDKQLSGEEAFVLWDTYGFPIDLTKLMAEEKGLTVDEDGYNKALEAARERSRNAQATQAGGAIIMDADATSVLHRRGIAPTDDSFKYVWFKDHESVVKAIYTGSEFVESVETDGDIGVVLESTSFYAEQGGQIFDTGSLEGPHASFKVHNVQVFGGFVLHIGSNGNGISVGDKVVCKVDYGRRSLIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVDPDNLRKIESIVNEQIRDELDVNAKEATLAEAKRINGLRAVFGEVYPDPVRVVSIGEKVEDLLADPENKKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRASDAIRVANEFEQHVDNAAKLEGSSLEEKVLYLKSNVETLSIPAAKKADIKNKIVQLQDRVRKAQKQIAEENKRKAVTITAEKAELAASDGKTFCVSQVEVGLDVNAVREAVTKVMEQKGISVMVFSTDKSTNKAVVCAGVPEKGDKGKLDVTEWLTNALGPLKGRCGKGKGGLATGQGTDASHVSEAMDLATSFASMKLT* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0905 1003 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 737 795 IPR012947 GO:0004812|GO:0005524|GO:0043039
Amo13g0905 1003 SUPERFAMILY ThrRS/AlaRS common domain 635 811 IPR018163 GO:0000166
Amo13g0905 1003 Gene3D - 546 635 - -
Amo13g0905 1003 Coils Coil 849 876 - -
Amo13g0905 1003 Pfam tRNA synthetases class II (A) 68 637 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Amo13g0905 1003 Pfam DHHA1 domain 857 996 IPR003156 GO:0003676
Amo13g0905 1003 SUPERFAMILY Class II aaRS and biotin synthetases 65 315 IPR045864 -
Amo13g0905 1003 PANTHER BNACNNG61840D PROTEIN 46 1002 - -
Amo13g0905 1003 SMART tRNA_SAD_4 737 796 IPR012947 GO:0004812|GO:0005524|GO:0043039
Amo13g0905 1003 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 63 809 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Amo13g0905 1003 TIGRFAM alaS: alanine--tRNA ligase 68 980 IPR002318 GO:0000166|GO:0005737
Amo13g0905 1003 Gene3D - 889 998 - -
Amo13g0905 1003 Gene3D Bira Bifunctional Protein; Domain 2 64 312 IPR045864 -
Amo13g0905 1003 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 316 517 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Amo13g0905 1003 Hamap Alanine--tRNA ligase [alaS]. 63 1002 IPR023033 GO:0004813
Amo13g0905 1003 CDD AlaRS_core 65 311 - -
Amo13g0905 1003 Gene3D - 636 813 - -
Amo13g0905 1003 PRINTS Alanyl-tRNA synthetase signature 141 152 IPR002318 GO:0000166|GO:0005737
Amo13g0905 1003 PRINTS Alanyl-tRNA synthetase signature 269 280 IPR002318 GO:0000166|GO:0005737
Amo13g0905 1003 PRINTS Alanyl-tRNA synthetase signature 296 309 IPR002318 GO:0000166|GO:0005737
Amo13g0905 1003 PRINTS Alanyl-tRNA synthetase signature 353 369 IPR002318 GO:0000166|GO:0005737
Amo13g0905 1003 PRINTS Alanyl-tRNA synthetase signature 377 390 IPR002318 GO:0000166|GO:0005737
Amo13g0905 1003 PANTHER ALANYL-TRNA SYNTHETASE 46 1002 - -
Amo13g0905 1003 SUPERFAMILY Translation proteins 562 635 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0905 Amo-Chr13 11133857 11145715 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0905 K01872 - gmx:100788271 1655.57