Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0904 ATGAGTCATTTGGATTTCGTTCGAAACAACGATTCCGACGTCCAACGTTACCAGCAATTCGAGCTCCTTGAGCATCAAGCTCTCGCTGATAGAAAGCGCAAAGCCCTTTCACTTTCAGATTCTCATCATGAAGGGGCTCCTTCAAAGAAGGCGAGGGAAGATGATAATCCTGGGGCAACCATGGCTGAGATAATGGAAGCAATGAATTTTGGCACACGCAGGAGATCAAGAAAGCAAAAGAAAAGAGGTAGGCGAAAAGGATCAAGGAATAAGCTAAACCCACAGATAACAAGAATGCTCGGTGATGCGACGCTTCACTACGTTTGTCGCCGTTATGACCAGGCTATAGCTGTCTCACATGAAGTTATTAGGCTGGCACCAAATGTGGCTGATTCGTATCACACCCTTGGACTTGTCTATTATGACCTTGAGGATTACAAAAGGGCGATGGATTTTTACATGATTGCTGCTCATTTGACTCCTAAAGATTCATCCCGTTGGAAAATGCTTTATGACTGGTCCAGAGAACAAGGTGATATTGGTCAAGCCAGTTACTGCCTTTCCAAAGCGATAACAGCAGATCCCAAGGACGAGAGTCTTAGGAAAGAACGTGCAATGTTTTATGTTGAGCTTGGAGATTATCAAAAAGCTGCTGCTGCATATGAGCAAGTACATCACCTTTGTCCTGAGAATGTTGAAGCACTAACAGAAGCAGCTAAGTGCTACCAAAAATGTGGTCAAGTAGCCTGTTCAATCGAAATTCTTGAAGATTATCTAAGGAGTCAACCAGACAAAGCTCATGCAAGCTTAGTTGACCTATTGGCTACTATATACATGGAAACTAAGGCACATGACAGAGCTCTTCAGCATATTGAGCATGTTCGAATAGTAAATTCAGGGGAAGAAATGCCTTTGAACCTGAAAATTAAGTCTGGAATCTGCCATGCTCATCTTGGAAACATGGAGAGGGCTCAGGCTTGCTTCAGTGACATAAAACCAGAGAATGCAATTGAACATGTTGAGTTGGTCACAGCGGCTGCAGACTCCTTAATGGAACTTGAGCATTATGACTCCGCATTGAGTTATTATTTGATGCTGGAAGGCAATGGTGGAAATGAACATGGTCTTCTGTATCTGAAAATTGCTAGGTCCCTAGAAACACTACAAGATGATGTTGATGCACGCATTACGTTGGCTTCCCTTTTGATTGAAGAAGGGAAAGAAGATGAAGCCATTTCTTTGCTTTCTCCTCCAAAGGATTCTGACTCTGCTGAAGCACATTCTGTAAAGCCAAATAAATGGTGGGTTAATGAAAGGATAAAACTGAAGCTTTGCAATATATATTGGAATAAAGGGTTGCTAGATGATTTTGTGGATGCAATTTTTCCTATGATACGTGAATCATTGTACGGTAAATCGAAAAAACGCCTCTCTACACGAGACCTGGTTGAAAGGGTTAGGGTAATGAATGCTCCAGAAAAGGATAATGTATTTCAAGGATTCAGGCCTATAGCTACTCCTTCTGATAGGTCTGACCGGTGGAAAGCTTCCAGGGCAAAACGATCACTTCAAAAGAAGGAAATTGAGAAGGAGAAAAAGAAAGCTGAGGCATTGGCAGCTGGAATTGACTGGCTGAGCGATGATTCGGATATTGAACCTCAGAGAGTACGCAAAGAACCTCCATTATGTAATCTTCTCAAGGATGAAGAGCATCACCAGCTAATAATTAATTTGTGCAAGGCATTAGCTTCCTTACAAAGGTATTGGGAAGCATTGGAGATTATAAATATTACTCTCAGATTGACTCATTCTGCACTTTCTGCTGACAAGAAAGAGGAACTTCGATCTCTTGGAGCTCAAATGGCATACAACACCACGGATCCTAAGCATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCGTACAGTGTTGCTGCTTGGAATTGCTACTACAAGGTTATGTCTAGATTGGAAAATCGAGATACAAGACACTCCAAGTTTATACTTAATATGCAAGGAAAGTTCGTGGATTGTGTACCTCCTATTCTCATTTCTGCTAATCAGTATACTATAATTAGCCATCACCAAGATGCTGCAAGGAAATACTTAGAAGCTTATAAACTTCTGCCAGAGAATCCCTTGGTTAATCTTTGCGTTGGAACTGCCTTGATCAATCTAGCATTGGGTTTAAGACTTCAAAATAAGCATCAGTGTGTTGTACAAGGTTTAGCGTTCCTCTATAACAATTTAAGGATCTGCGACAACAGCCAGGAATCATTGTACAACATAGCTAGGGCGTTCCATCATGTTGGTCTTGTAACTTTGGCAGCTTTCTATTATGAGAAAGTGCTTGCTATTCGTGAGAAGGACTATCCCATTCCAAAACTTCTCAATGAAACACCGGATATTGCTGAAAATCATAAACCCGGTTACTGTGATCTTCGCAGAGAGGCTGCTCACAATCTGCACCTGATCTACAAGAAGAGTGGAGCTCTTGATCTTGCTAGACAAGTTCTAAAAGATCATTGCACCTTCTGA 2544 0.4151 MSHLDFVRNNDSDVQRYQQFELLEHQALADRKRKALSLSDSHHEGAPSKKAREDDNPGATMAEIMEAMNFGTRRRSRKQKKRGRRKGSRNKLNPQITRMLGDATLHYVCRRYDQAIAVSHEVIRLAPNVADSYHTLGLVYYDLEDYKRAMDFYMIAAHLTPKDSSRWKMLYDWSREQGDIGQASYCLSKAITADPKDESLRKERAMFYVELGDYQKAAAAYEQVHHLCPENVEALTEAAKCYQKCGQVACSIEILEDYLRSQPDKAHASLVDLLATIYMETKAHDRALQHIEHVRIVNSGEEMPLNLKIKSGICHAHLGNMERAQACFSDIKPENAIEHVELVTAAADSLMELEHYDSALSYYLMLEGNGGNEHGLLYLKIARSLETLQDDVDARITLASLLIEEGKEDEAISLLSPPKDSDSAEAHSVKPNKWWVNERIKLKLCNIYWNKGLLDDFVDAIFPMIRESLYGKSKKRLSTRDLVERVRVMNAPEKDNVFQGFRPIATPSDRSDRWKASRAKRSLQKKEIEKEKKKAEALAAGIDWLSDDSDIEPQRVRKEPPLCNLLKDEEHHQLIINLCKALASLQRYWEALEIINITLRLTHSALSADKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPYSVAAWNCYYKVMSRLENRDTRHSKFILNMQGKFVDCVPPILISANQYTIISHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGLRLQNKHQCVVQGLAFLYNNLRICDNSQESLYNIARAFHHVGLVTLAAFYYEKVLAIREKDYPIPKLLNETPDIAENHKPGYCDLRREAAHNLHLIYKKSGALDLARQVLKDHCTF* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0904 847 ProSiteProfiles TPR repeat region circular profile. 130 163 - -
Amo13g0904 847 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 12 847 IPR039340 GO:0006383
Amo13g0904 847 Coils Coil 516 536 - -
Amo13g0904 847 Gene3D Tetratricopeptide repeat domain 81 302 IPR011990 GO:0005515
Amo13g0904 847 MobiDBLite consensus disorder prediction 74 91 - -
Amo13g0904 847 MobiDBLite consensus disorder prediction 34 93 - -
Amo13g0904 847 ProSiteProfiles TPR repeat profile. 130 163 IPR019734 GO:0005515
Amo13g0904 847 ProSiteProfiles TPR repeat profile. 198 231 IPR019734 GO:0005515
Amo13g0904 847 SUPERFAMILY TPR-like 685 795 IPR011990 GO:0005515
Amo13g0904 847 MobiDBLite consensus disorder prediction 34 59 - -
Amo13g0904 847 Pfam Tetratricopeptide repeat 210 270 - -
Amo13g0904 847 SUPERFAMILY TPR-like 272 412 IPR011990 GO:0005515
Amo13g0904 847 Pfam Tetratricopeptide repeat 130 154 IPR019734 GO:0005515
Amo13g0904 847 Gene3D Tetratricopeptide repeat domain 305 462 IPR011990 GO:0005515
Amo13g0904 847 SUPERFAMILY TPR-like 103 292 IPR011990 GO:0005515
Amo13g0904 847 Gene3D Tetratricopeptide repeat domain 486 844 IPR011990 GO:0005515
Amo13g0904 847 SMART tpr_5 130 163 IPR019734 GO:0005515
Amo13g0904 847 SMART tpr_5 759 792 IPR019734 GO:0005515
Amo13g0904 847 SMART tpr_5 96 129 IPR019734 GO:0005515
Amo13g0904 847 SMART tpr_5 198 231 IPR019734 GO:0005515
Amo13g0904 847 SMART tpr_5 268 301 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0904 Amo-Chr13 11121293 11128031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0904 111 297 Glycosyltransferase AT3G04240 23.529 3.71e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0904 K15201 - gmx:100804533 1244.57