Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0893 ATGAACATCTCTTTATGCATCATAACACTACTACTGTTGCACTTGGGCTTATTTTTAGGGGCAAGCTTAGCCTACTCCTCAAGCTTCAACTATGGTGATGCTGTTGACAAGAGCTTGATGTTCTTTGAAGCCCAAAGGTCTGGTAAATTGCCACCTCAGCAGCGAGTCAAGTGGCGCGGTGATTCTGGCCTCAATGATGGACTTTCACAAGGAGTGGACCTTGTGGGAGGGTACTATGATGCTGGGGATCATGTGAAGTTTGGGCTGCCAATGGCATATAGTGTGACAATGCTTGCATGGGGAGCCATTGAGTTCAGAAAAGAGATCACTGACTTGAACCAAATGGGACACACTTTGTGGGCCATTAAATGGGGAACTGATTACTTCCTCAAAGCACATCCTCAGCCTAATGTTCTTTGGGGACAGGTGGGGGATGGAGCCTCGGATCACTATTGCTGGGAGCGTGCTGAAGACATGACAACTTCAAGAACTGCCTATAAAGTTGATGAAGAGCATCCTGGCTCTGATATTGCTGGTGAAACTGCAGCTGCATTGGCTGCAGCATCCATAGCCTTCAAGCCCTACAACTCTTCTTACTCTAGTCTTCTCCTAATTCATGCAAAACAGCTCTTCACATTTGCAGATAGGTTCAGAGGTCTATATGATGATTCCATAACTAGTGCTCAGCAATTCTACACTTCTTCCGGTTACTCAGATGAACTATTATGGGCTGCAGCATGGTTGCATCAAGCAACTGATGATGAATACTACCTAAAGTATGTAGTGGACAATGCTGTGTACATGGGTGGAACTGGCTGGGCAGTGAAGGAGTTCTCTTGGGACAATAAATATGCCGGTGTACAAATCCTCTTGTCGAAGGTGTTACTAGAAGGAAAGGCTGGTTCATATGCCTCTACACTAAAGCAGTACCAAGCCAAGGCAGATTATTTTACCTGTGCTTCCTTGCAAAAGAATGATGGTTACAGTGTCCAGAAGACTCCAGGTGGTCTAGTATACGTGCGCGAATGGAACAACATGCAGTATGTTTCTTCTTCTGCATTTCTCTTGGTTGCTTACTCTAAGTATCTATCAGATGCAAAAACTCAGATTATTTGTCCAGATGGACAAGTTCAGCCTCAGGAGCTCCTCAATTTTGCAAAATCACAGGCTGATTACATCCTTGGCAAAAACCCTGAGGGTATGAGCTACTTGGTTGGATCTGGACCAAAATATCCTGTACATGTTCACCACAGAGGGGCTTCCATTGCTTCAATCTTTTCTATTAGGTCTGAAGTTGGCTGCATCCAAGGATTCGAGACATGGTATCACCGTGCCGAACCGAATCCTAACATAATCTATGGTGCCCTTGTGGGTGGTCCTGATAAAAATGATGAGTTCTCTGATGACAGATCAAATTATGAACAAACTGAGCCTACGCTTTCAGGATCAGCTCCTCTTGTAGGCATCTTTGCTAAACTGCAGAGTTTATATGGCAATTCAGGTTACTACCATAAGGAATCATCAGTTCCCCACCACAAAACACCAAATACCACAAGCTCATGGAAAACATCATTGTCTAAAACATTAGAAGGTGCACCAATTGAGTTCCTTCACTCAATTACTAGCTCATGGACTGTTGGGGCTACAACTTATTACCGCCACAGAGTGATAATCAAGAACACTTCTTTGGAGCCAATAACAGATCTCAAGTTGGTGATTGAGAATCTCTCAGGATCTATATGGGGTCTATCTCCAACAAATGAGAAGAACATTTATGAACTTCCACAATGGCTCAATGTCTTGAATCCTGACTCAGAGTGTATGTTTGTTTATGTTCAAGAAGGACCACAAGCAAAGATCAGTGTTCAAAGCTTCCATTGA 1881 0.437 MNISLCIITLLLLHLGLFLGASLAYSSSFNYGDAVDKSLMFFEAQRSGKLPPQQRVKWRGDSGLNDGLSQGVDLVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFRKEITDLNQMGHTLWAIKWGTDYFLKAHPQPNVLWGQVGDGASDHYCWERAEDMTTSRTAYKVDEEHPGSDIAGETAAALAAASIAFKPYNSSYSSLLLIHAKQLFTFADRFRGLYDDSITSAQQFYTSSGYSDELLWAAAWLHQATDDEYYLKYVVDNAVYMGGTGWAVKEFSWDNKYAGVQILLSKVLLEGKAGSYASTLKQYQAKADYFTCASLQKNDGYSVQKTPGGLVYVREWNNMQYVSSSAFLLVAYSKYLSDAKTQIICPDGQVQPQELLNFAKSQADYILGKNPEGMSYLVGSGPKYPVHVHHRGASIASIFSIRSEVGCIQGFETWYHRAEPNPNIIYGALVGGPDKNDEFSDDRSNYEQTEPTLSGSAPLVGIFAKLQSLYGNSGYYHKESSVPHHKTPNTTSSWKTSLSKTLEGAPIEFLHSITSSWTVGATTYYRHRVIIKNTSLEPITDLKLVIENLSGSIWGLSPTNEKNIYELPQWLNVLNPDSECMFVYVQEGPQAKISVQSFH* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0893 626 Pfam Carbohydrate binding domain CBM49 534 613 IPR019028 GO:0030246
Amo13g0893 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Amo13g0893 626 SMART CBM49_2 534 616 IPR019028 GO:0030246
Amo13g0893 626 SUPERFAMILY Six-hairpin glycosidases 28 504 IPR008928 GO:0005975
Amo13g0893 626 PANTHER ENDOGLUCANASE 5 10 581 - -
Amo13g0893 626 PANTHER ENDO-1,4-BETA-GLUCANASE 10 581 - -
Amo13g0893 626 Pfam Glycosyl hydrolase family 9 31 489 IPR001701 GO:0004553|GO:0005975
Amo13g0893 626 Gene3D - 26 507 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0893 Amo-Chr13 11013404 11017860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0893 29 626 Glycoside Hydrolase AT1G48930 69.884 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0893 K01179 - gmx:100802420 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0893 13 11013404 11017860 Amo13g0893 13 11013404 11017860 ECH