Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0807 ATGAAGGGAGTGTTTGTAGTTGCGCTCATTGCATTTGCATTCTTGATGGCTGCGAAGTTAGCGAGTGGAAGTCACGACTACCAAGACGCGTTGACGAAGGCAGTACTGTTCTTTGAAGGGCAGAGGTCAGGGTTCTTGCCGCAGGACCAGAGGATGAGCTGGCGTAGCAACTCCGGACTCAGCGACGGATGGACCTACAACGCCGATCTCGTCGGCGGTTACTACGACGCCGGCGACAACATCAAGTTTGGGTTTCCGATGGCATTCACCACCACTATGCTCGCTTGGAGCGTCCTTGAGTTCGGTGCCATCATGCCTCCCAATGAACTCAGAAACGCAATGCTTGCAATCCGTTGGGCTACTGATTACTTGCTCAAGACCGTTTCTCAGCCTAATCGGATTTTTGTTCAGGTGGGGGATCCACGCTCAGACCATGATTGTTGGGAGAGGCCTGAGGACATGGACACAGCCAGGACGGTGTACGCTGTTGATGCCCCAAACGCGGCTTCTGATGTTGCCGGTGAAACCGCGGCCGCGCTTGCAGCCTCATCCTTGGTATTCTGGTCAACTGACCCGGGTTATGCAGAAACATTGTTACGGAATGCTATTAGTGCCTTCCAATTTGCAGATAACTACAGGGGTGCTTACAGTGACAATGCCAATGTTAAGTATAGTGCTTGCCCATATTATTGTGATTTTGATGGATATCAGGACGAGTTATTGTGGGGTGCGGCATGGCTAAGAAGGGCCACGAAGGATGATAATTTCCTCAACTACCTTCAAACCAATGGCAAAACGCTTGGTGCTGACGACAACATCAATGAATTTGGTTGGGACAACAAGCATGCTGGCCTCAATGTTCTTGTCTCCAAGGAAGTCCTTGAAGGAAATCTATACTCACTTGAATCCTTCAAGGCGTCAGCCGATAGCTTCATGTGCACGCTCATACCCGAATCTCCTAGCTCACACATAGAGTACACTCCTGGTGGACTTTTGTTTAGGCCCGGAGGGAGTAACTTGCAACATGCTACTTCAATTTCATTCCTTGAGTTGGTTTATGCTAATTACTTGGATCACACGTCACAGTCCCTCAATTGTGGGAATGTTGTGGTTAGCGCTCAAACACTTCGGCAACATGCTAAGAGGCAAGTTGATTACATTCTGGGTGATAATCCAATGGGGTTATCGTACATGGTTGGATATAGCAACTACTATCCGCAGCGCATTCATCACCGTGGCTCCTCTTTACCTTCCATCAAGGATCATCCTCAGTTTATTGCATGCAAGGAAGGTTCAACGTACTACAACTCCACTGATCCAAACCCAAATGTGCTTGTGGGAGCCATCGTTGGAGGACCTGGGGAAGATGATGTGTATGTGGATAATAGGGATGATTTTAGAAAATCCGAGCCAACCACATACATCAATGCACCATTTATTGGTGTTCTAGCATATTTTGCTGCTAATCCTAACTTCAGTTAA 1482 0.4811 MKGVFVVALIAFAFLMAAKLASGSHDYQDALTKAVLFFEGQRSGFLPQDQRMSWRSNSGLSDGWTYNADLVGGYYDAGDNIKFGFPMAFTTTMLAWSVLEFGAIMPPNELRNAMLAIRWATDYLLKTVSQPNRIFVQVGDPRSDHDCWERPEDMDTARTVYAVDAPNAASDVAGETAAALAASSLVFWSTDPGYAETLLRNAISAFQFADNYRGAYSDNANVKYSACPYYCDFDGYQDELLWGAAWLRRATKDDNFLNYLQTNGKTLGADDNINEFGWDNKHAGLNVLVSKEVLEGNLYSLESFKASADSFMCTLIPESPSSHIEYTPGGLLFRPGGSNLQHATSISFLELVYANYLDHTSQSLNCGNVVVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRGSSLPSIKDHPQFIACKEGSTYYNSTDPNPNVLVGAIVGGPGEDDVYVDNRDDFRKSEPTTYINAPFIGVLAYFAANPNFS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0807 493 Pfam Glycosyl hydrolase family 9 27 483 IPR001701 GO:0004553|GO:0005975
Amo13g0807 493 PANTHER ENDOGLUCANASE 24 7 492 - -
Amo13g0807 493 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 386 412 IPR018221 -
Amo13g0807 493 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 459 477 IPR033126 -
Amo13g0807 493 SUPERFAMILY Six-hairpin glycosidases 23 489 IPR008928 GO:0005975
Amo13g0807 493 PANTHER ENDO-1,4-BETA-GLUCANASE 7 492 - -
Amo13g0807 493 Gene3D - 24 489 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0807 Amo-Chr13 10060494 10064361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0807 4 489 Glycoside Hydrolase AT1G70710 59.465 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0807 K01179 - gmx:100101849 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0807 13 10060494 10064361 Amo13g0807 13 10060494 10064361 ECH