LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g0801	ATGGGGAGTTTAGGAGCGATTATGAAGCATCCAGATGATTTGTATCCGTTGCTGAAGCTGAAAATGGCGGCGAAGAAGGCCGAGAAGCAGATCCCGYCGGAGCCGCACTGGAGATTCTGCTACACCATGCTCCACAAGGTTTCTAGAAGCTTYGCACTCGTCATTCAGCAGCTCGGTACCGAWCTTCGCAACGCCGTTTGCATATTTTATTTGGTTCTTCGAGCGTTGGATACCGTTGAGGATGATACCAGCATAGATACAGATGTCAAAGTGCCAATACTAATAGCTTTTCATAATCACATATATGATCGTGATTGGCACTTTTCATGTGGCACAAACAACTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGGGCTACCAAGAAGCAATTGAGGATATTACGAAAAGGATGGGTGCAGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAATTGATGACTAYGATGARTATTGTCACTAYGTGGCAGGACTTGTTGGGTTAGGTTTATCAAAGCTTTTCCATGCCTCTGGTTCAGAAGATCTTGCTCCAGATGACCTCTCCAATTCAATGGGCTTGTTTCTGCAGAAAGCAAACATTATGCGAGATTATTTGGAAGACATCAATGAGATCCCCAAGTCACGAATGTTTTGGCCTCGGCAGATCTGGAGTAAATATGTTAACAAACTTGAGGAGCTGAAATATCCGGAGAATTCCATCAAGGCAGTGCAATGCTTAAATGACATGGTCACTAACGCTCTGATGCATGCCGAAGATTCTTTAAAGTACATGTCTGCATTAMGAGACCTGGCTATATTTCGCTTTTGTGCTATTCCCCAGATAATGGCAATTGGGACAATTGCATTGTGCTATAACAACATCGAAGTCTTCAGAGGTGTAGTAAAAATGAGGCGTGGTTTAACTGCCAAAGTGATTGACCGAACAAAGACAATGGCTGATGTTTATGGTGCATTCTTTGATTTTGCTTGTATATTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCTACAAAAACATTGAGCAGGCTGCAATCTATACAGAAGACTTGCAGAGAATCTGGTCTCCTAAGTAAAAGGAAATCTTACATTGTGAATGGGAACGGATATAGCTCCACCATGATCTTCATCCTGATCATCACGTTTTCCATCCTTTTTGCATATCTCTCTGCTAACCGCCAAAACATTTAG	1239	0.4189	MGSLGAIMKHPDDLYPLLKLKMAAKKAEKQIPXEPHWRFCYTMLHKVSRSFALVIQQLGTXLRNAVCIFYLVLRALDTVEDDTSIDTDVKVPILIAFHNHIYDRDWHFSCGTNNYKVLMDQFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLAPDDLSNSMGLFLQKANIMRDYLEDINEIPKSRMFWPRQIWSKYVNKLEELKYPENSIKAVQCLNDMVTNALMHAEDSLKYMSALRDLAIFRFCAIPQIMAIGTIALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFACILESKVDKNDPNATKTLSRLQSIQKTCRESGLLSKRKSYIVNGNGYSSTMIFILIITFSILFAYLSANRQNI*	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g0801	412	Gene3D	Farnesyl Diphosphate Synthase	34	371	IPR008949	-
	Amo13g0801	412	PANTHER	SQUALENE SYNTHASE-LIKE ISOFORM X1	1	409	-	-
	Amo13g0801	412	TIGRFAM	squal_synth: farnesyl-diphosphate farnesyltransferase	36	367	IPR006449	GO:0004310\|GO:0008610
	Amo13g0801	412	PANTHER	FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE	1	409	IPR044844	GO:0004311
	Amo13g0801	412	Pfam	Squalene/phytoene synthase	45	315	IPR002060	GO:0009058
	Amo13g0801	412	CDD	Trans_IPPS_HH	38	320	IPR033904	GO:0004311
	Amo13g0801	412	SFLD	Squalene/Phytoene Synthase Like	36	325	IPR002060	GO:0009058
	Amo13g0801	412	SUPERFAMILY	Terpenoid synthases	36	367	IPR008949	-
	Amo13g0801	412	ProSitePatterns	Squalene and phytoene synthases signature 1.	168	183	IPR019845	GO:0016765
	Amo13g0801	412	ProSitePatterns	Squalene and phytoene synthases signature 2.	201	229	IPR019845	GO:0016765
	Amo13g0801	412	SFLD	Isoprenoid Synthase Type I	36	325	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g0801	Amo-Chr13	9966457	9973159	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g0801	K00801		-	gmx:547940	736.873