Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0794 ATGGATGCTATTAGAAAGCAAGCTTCGAAGCTTCGAGAACAAGTCGCTCGCCAACAACAGGCTGTTCTGAAACAGTGGTATGGCGGTTCAGATAATTTGGTCGCTGATGAGGCAGAACTCCAGCTACATCAGAGACTTGAGAAGCTTTATATATCGACACGTGCGGGAAAGCACTATCAAAGAGATATTGTACGTGGTGTAGAAGGTTATATTGTTACCGGATCAAAGCAAGTTGAAATTGGGGCAAAGCTATCAGAAGATAGTAGGAAATATGGTGCAGAAAATACATGTACGAGTGGCAATACATTATCTAGAGCTGCACTAAATTTCGCAAGAGCCCGAGCTCAAATGGAGAAGGAACATGGAAACTTACTGAAAGCTTTTGGAACACAGGTTGCAGAGCCCTTAAGAGCAATGGTGGTGGGAGCTCCATTGGAGGATGCCCGGCATCTAGCTCAACGCTATGACAGAATGCGACAGGAAGCTGAAGCCCAGGCTATTGAAGTTTCCAAGCGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGACAATGCCATGAAATTTGAAGCAGCTGAAGCAAAACTGCATGACCTGAAGACAAACATGGGAATATTGGGGAAGGAAGCTGCTGCTGCATTGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACACTTCAGCGACTTATAGCTATGGTTGAAGCAGAGCGTGCATATCATCAAATAGTCCTACAAATTCTTGATCAGCTTGAGGGTGAGATGATATCTGAACGTCATCGAATTGAAGCTGCTCCTGCTCCTGCTCCTAGTGTGGATGAGAGTATGCCACCACCACCGTCATACGAGGAAGCTAATGGTGTCTATGCTTCTCAGGCAAGTAATGGATCAACTGATAGCATGGGTTACTTCTTAGGCGAGGTTTTGTTTCCGTACTCTGCTGTGTCTGAAGTGGAGTTGAATCTTTCAGTTGGTGATTATGTTGTTGTCCGAAAGGTAACAAATAATGGCTGGGCCGAGGGTGAATGCAAAGGAAAAGCAGGTTGGTTTCCATTTAGTTACATTGAAAGAAGGGAACGGGTTCTTGCTAGCAAGGTGGCTGAAGTGTTTTGA 1110 0.4532 MDAIRKQASKLREQVARQQQAVLKQWYGGSDNLVADEAELQLHQRLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGAKLSEDSRKYGAENTCTSGNTLSRAALNFARARAQMEKEHGNLLKAFGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNADNAMKFEAAEAKLHDLKTNMGILGKEAAAALAAVEAQQQRLTLQRLIAMVEAERAYHQIVLQILDQLEGEMISERHRIEAAPAPAPSVDESMPPPPSYEEANGVYASQASNGSTDSMGYFLGEVLFPYSAVSEVELNLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFSYIERRERVLASKVAEVF* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0794 369 Coils Coil 145 172 - -
Amo13g0794 369 Gene3D Arfaptin homology (AH) domain/BAR domain 40 264 IPR027267 -
Amo13g0794 369 PANTHER SH3 DOMAIN-CONTAINING 1 369 - -
Amo13g0794 369 SUPERFAMILY SH3-domain 278 357 IPR036028 GO:0005515
Amo13g0794 369 Coils Coil 216 236 - -
Amo13g0794 369 Coils Coil 1 21 - -
Amo13g0794 369 SUPERFAMILY BAR/IMD domain-like 41 254 IPR027267 -
Amo13g0794 369 SMART SH3_2 303 358 IPR001452 GO:0005515
Amo13g0794 369 Pfam Variant SH3 domain 307 355 IPR001452 GO:0005515
Amo13g0794 369 Gene3D SH3 Domains 290 367 - -
Amo13g0794 369 ProSiteProfiles Src homology 3 (SH3) domain profile. 300 359 IPR001452 GO:0005515
Amo13g0794 369 PANTHER PROTEIN, PUTATIVE-RELATED 1 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0794 Amo-Chr13 9856087 9859662 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0794 - - gmx:100783004 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0794 13 9856087 9859662 Amo13g0794 13 9856087 9859662 ECH