Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0782 GGTTTATCATTTGGGCCAATTTGGGTTTATCTGTTTTATCTGACCAATTGGACAAAGCTCAACCAAAGCCCAGAAGAGAAGCTTCTTACCTTACTCAACGATTTCAAGAAGCTACTTCCTCCTGACCAAAAAAAAGCTACTTCCTCCAATCTCTCGCCATGGAGCAGCGCCCGAAACTTCAATCTGATCGGAGAGTATTTTTCCGATTGGTTGCCAAACGACGCCGTGTCTTTTTTTTTTTTTTTTTTAAAAGCACAATCCAGACCGGCTTCGTATATATATAAACTCCAAATTCGCATGCATTGCTTCTTCACTTCCTCACACTTTATTTTCAGTATGGAACGAACAACACTCTTTCTCTTCTCTCTCTTCGCTCTCCTCTTTTTGTTTCTCTCTCCGATATCGTCGGAGGAGGACGGTGGTGCTGACGACGCCTTAATCCGCCAGGTGGTTGGTGACGGCGACGGCGACGGCGACGCGCATTTGTTGGGAGCGGAGCATCACTTCGCCGCCTTCAAGCGGAGATTCGGGAAGGTGTATTCTACGCTGGAGGAGCACGATTACAGGTTCGCGGTGTTCAAGGCTAACATGCACCGCGCGAGAAGACACCAGAGGATGGACCCCTCGGCGGTTCACGGCGTCACGCGGTTCTCTGACATGACGGAATCTGAGTTCAGGAAGAACGTTTTGGGGCTAAGAGGGGTTAGGTTGCCATCTGATGCAAACAAAGCTCCTATTCTGCCAACAGCAGATCTTCCCTCCGATTTTGATTGGAGAGATCATGGAGCTGTTACCCCTGTCAAAAATCAGGGTTCTTGTGGATCGTGTTGGAGTTTCAGCGCAACTGGGGCACTGGAAGGTGCTCATTATCTAGCTACCGGGGAACTTGTTAGTCTCAGTGAACAGCAGCTAGTTGATTGCGATCATGAGTGCGACCCAGATCAACCAGGTTCTTGTGACAAAGGGTGCAATGGTGGATTGATGAACAGCGCTTTTGAATACATCCTTAAATCCGGTGGGATCATGAGAGAGGAAGACTATCCTTATAAGGGTAGTGATCGTGGAACCTGCAAATTCAACAAGACAATGATAGCAGCATCAGTAGCAAACTTCAGTGTAGTTTCACTTGATGAAGACCAGATTGCTGCCAATCTTGTCAAAAATGGCCCTCTTGCAGTGGCTATAAATGCTGTATTTATGCAGACATATATTGGAGGGGTTTCATGCCCATACATATGTTCAAAGAGGTTGGATCATGGGGTGTTACTGGTGGGATATGGCTCTGGAGGCTATTCTCTGATTCGGATGAAGGAGAAACCATATTGGATCATCAAGAATTCATGGGGAGAAAATTGGGGAGAAAATGGATACTACAAGATTTGCCGTGGACGGAATATCTGTGGGGTGGACTCCTTGGTTTCAACTGTGGCAGCTGTTCATACCACTGCTCATTAG 1455 0.4701 GLSFGPIWVYLFYLTNWTKLNQSPEEKLLTLLNDFKKLLPPDQKKATSSNLSPWSSARNFNLIGEYFSDWLPNDAVSFFFFFLKAQSRPASYIYKLQIRMHCFFTSSHFIFSMERTTLFLFSLFALLFLFLSPISSEEDGGADDALIRQVVGDGDGDGDAHLLGAEHHFAAFKRRFGKVYSTLEEHDYRFAVFKANMHRARRHQRMDPSAVHGVTRFSDMTESEFRKNVLGLRGVRLPSDANKAPILPTADLPSDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGAHYLATGELVSLSEQQLVDCDHECDPDQPGSCDKGCNGGLMNSAFEYILKSGGIMREEDYPYKGSDRGTCKFNKTMIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVFMQTYIGGVSCPYICSKRLDHGVLLVGYGSGGYSLIRMKEKPYWIIKNSWGENWGENGYYKICRGRNICGVDSLVSTVAAVHTTAH* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0782 484 Gene3D Cysteine proteinases 157 477 - -
Amo13g0782 484 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 441 460 IPR025661 -
Amo13g0782 484 PANTHER CYSTEINE PROTEASE RD19C-RELATED 142 478 - -
Amo13g0782 484 CDD Peptidase_C1A 253 476 IPR039417 -
Amo13g0782 484 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 270 281 IPR000169 -
Amo13g0782 484 Pfam Cathepsin propeptide inhibitor domain (I29) 169 225 IPR013201 -
Amo13g0782 484 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 417 427 IPR025660 -
Amo13g0782 484 Pfam Papain family cysteine protease 252 475 IPR000668 GO:0006508|GO:0008234
Amo13g0782 484 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 142 478 - -
Amo13g0782 484 SUPERFAMILY Cysteine proteinases 167 476 IPR038765 -
Amo13g0782 484 SMART pept_c1 252 477 IPR000668 GO:0006508|GO:0008234
Amo13g0782 484 SMART Inhibitor_I29_2 169 225 IPR013201 -
Amo13g0782 484 PRINTS Papain cysteine protease (C1) family signature 419 429 IPR000668 GO:0006508|GO:0008234
Amo13g0782 484 PRINTS Papain cysteine protease (C1) family signature 441 447 IPR000668 GO:0006508|GO:0008234
Amo13g0782 484 PRINTS Papain cysteine protease (C1) family signature 270 285 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0782 Amo-Chr13 9699998 9704669 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0782 K01373 - gmx:100812198 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0782 13 9699998 9704669 Amo13g0782 13 9699998 9704669 ECH