Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0778 ATGCTCGTGCTATTCGAAACTCCTGCGGGCTTTGCCCTATTCAAGGTTCTTGATGAAGGGAAGCTCTCTAAAGTTGAGGACTTATGGAAAGACTTTTCCACTGCAGAGTCTGCTAGACAGGTGGTCAAGTTGAAAGCTTTTTCCAAGTTTGAGAATACTTCGGAAGCTTTGGAGGCTGCTACTCTGTTGATTGATGGTAAAGCCAGCAAGGGTCTGCGCAAGTTCCTGCGCGCTCATTGTGGCAAAGATACATTAGCTGTTGCTGATTCGAAGCTTGGGAATGCAATTAAGGAGAAATTGCAAATTGATTGTGTTCACAACAATGCTGTTATGGAGTTGATGAGAGGAGTTAGAAATCAGTTAACTGAACTCATATCTGGTCTAGCTGTACAAGATATGGCACCTATGAGCTTGGGTTTATCTCATAGCTTATCAAGATATAAACTTAAGTTTAGTGCTGAGAAGGTGGATACCATGATTGTCCAGGCCATTGGCTTACTTGATGATCTTGATAAAGAGTTGAATACATATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCAGAGCTTACAAAAATTATTCAGGATAACATCCAATATGCAAGGGCAGTCAAGTTGATGGGTGATCGTGTTAATGCTGCAAGTCTTGATTTCTCTGAGATTTTGCCAGAGGAAGTTGAGGCAGAATTGAAGGAAGCCTCCGTGATATCTATGGGAACTGAAATTGGTGAGCTGGATCTGGCAAATATCAGAGAACTCTGTGATCAGGTTTTATCTCTTTCAGAGTACAGAGCTCAACTCTTTGATTATCTGAAAAGTAGGATGAACACCATTGCTCCCAATTTGACGGCTCTGGTTGGTGAGCTCGTTGGTGCTCGTCTCATTGCTCATGGAGGTAGCTTACTAAATCTTGCAAAGCAGCCTGGTAGTACTGTCCAGATTCTTGGGGCTGAGAAGGCTCTCTTTAGGGCACTGAAGACTAAGCATGCAACTCCCAAGTATGGTCTTATTTATCATGCATCCTTGATTGGTCAGGCCGCTCCAAAGTTCAAGGGCAAGATCTCTCGGTCGCTTGCTGCAAAGTCAGCATTGGCCATTAGGTGTGATGCTCTTGGAGATGGTCAAGATAACACTATGGGATTGGAGAACAGAGCGAAGCTTGAAGCACGGTTGAGAAACCTTGAAGGCAAAGAATTAGGTCGTTTTGGTGGTTCTGCTAAGGGGAAGCCCAAGATTGAGGCATATGACAAGGATAGAAAGAAAGGAGCTGGTGGATTAATAACCCCGGCAAAGACATACAATCCTTCAGCAGATTCAGTTATTGGGCAATTGGCCTCTTCTATGGATGAGGATACCCAACAGCCTTCTACTGATAAAAAGAAAGAAAAGAAGGAAAAGAAAGAAAAGAAGAAAAAGGAGAAGGAGAAAAATGAAGAGGATAAAGAAACTTTGCAAGCTGATGGGGATGCTGACGAGGAACCAGTGAAGAAGGAAAAGAAGAAAAAGAAGAAGGATTCTACTGAGGATGCTGAGTTGCAGAATGGAGACAAGGATGCGGGTGAAAAGAAGAAAAAGAGGAAAAAGCATGAAGAGCAAGAAGAACCAGCTGAAATGCCAAGCAAAAAGAAAGGGAAAAAGAAGAAAAGTGAGGACTAA 1662 0.4296 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSTAESARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRAHCGKDTLAVADSKLGNAIKEKLQIDCVHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNIQYARAVKLMGDRVNAASLDFSEILPEEVEAELKEASVISMGTEIGELDLANIRELCDQVLSLSEYRAQLFDYLKSRMNTIAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKSALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFGGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNPSADSVIGQLASSMDEDTQQPSTDKKKEKKEKKEKKKKEKEKNEEDKETLQADGDADEEPVKKEKKKKKKDSTEDAELQNGDKDAGEKKKKRKKHEEQEEPAEMPSKKKGKKKKSED* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0778 553 PANTHER NUCLEOLAR PROTEIN 58 1 551 - -
Amo13g0778 553 MobiDBLite consensus disorder prediction 455 553 - -
Amo13g0778 553 SUPERFAMILY Nop domain 153 397 IPR036070 -
Amo13g0778 553 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 551 IPR045056 GO:0030515|GO:0031428|GO:0032040
Amo13g0778 553 Gene3D - 129 284 - -
Amo13g0778 553 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Amo13g0778 553 Gene3D Nop domain 285 397 IPR042239 -
Amo13g0778 553 MobiDBLite consensus disorder prediction 401 553 - -
Amo13g0778 553 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Amo13g0778 553 Coils Coil 458 489 - -
Amo13g0778 553 SMART NOSIC_2 159 211 IPR012976 -
Amo13g0778 553 MobiDBLite consensus disorder prediction 434 454 - -
Amo13g0778 553 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Amo13g0778 553 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0778 Amo-Chr13 9656182 9659700 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0778 K14565 - gmx:100775301 882.478