Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0773 ATGAGGTTTAAACCTGAGGTCTCATATTCCATCGCATTTCCAAAGCGATTCACGCGTAATGTCGGTCTACAGCCTGATCTGCCGCGGAGGACTTACCAAGCAGTAGTGGCTGCGACTCGAGATATGGGAATTTCCAAGGATGGGAAAATGCCCTGGAACTTACCTTCTGATCTCAAGTTCTTTCAGGAGATCACAACAACAACATCTGATTCTGGGAAGAAGAATGCAGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCTCCCGAGAAGAGGCCCCTTTCTGGTCGACTTAATGTTGTTCTGACTCGCTCTGGTAGTTTCGATATAGCTACAGCAGAGAATGTTGTTATATGTGGAAGTCTGTCTTCTGCTATGGAACTGTTGGCTGCATCTCCTTACTGTCTTTCAATTGAGAAAGTATTTCTTACAGGAGGTGGAGAGATATTTAGGGAGGCTCTTAATGCACCTGGATGTGAGGCTGTGCATATTACAGAAATTGAAGAACGCATTGAGTGCGACACTTTTATCCCTCAAATTGATACCTCCATGTTTCAGCCATGGTACTCATATTTTCCTTTGGTGGAAGACAACATCCGCTATTCTTTCACCACTTTTGTACGTGTGAGAAACTCTGCATTGGAGTCCCTGAGTCAGAATACTCATTCAGATTTTGATAATAGTTCAGACTCTAGAAAGTTTGAAGTTCAGAAATTTTCTTTTCTTCCTAAAATGATTTTTGAGAGACATGAGGAGTACAAGTACCTTAGACTGGTTCAAGAAATCATTTCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCCAAATTTGGTTGCCAGTATTTTGGCGTGGGGTTGTTGAAGAGCTTCTCTGGTTTATCAGTGGTTCAACAAGTGCTAAGCATTAGTTTGACAGACAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGTATACAGACATGCATGCTGATTACTCTGGTCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGACGGATAATTCTCTCAGCGTGGAATCCAGCTGATCTTAAATTGATGGCTCTTCCACCCTGCCACATGTTTGCGCAGTTTTATGTAGCAAATGGGGAGCTCTCGTGTCAAATGTACCAGCGATCTGCTGATATGGGCCTGGGTGTGCCATTTAATATTGCATCTTATGCGCTCTTGACATGCATGATTGCTCATGTTTGTGATCTTGTACCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCTTTGCAGGAACAGCTCCAAAACCATCCTAAACCTTTTCCGATTTTGAAGATAAACCCAAAGAAGAAGGATATAGATTCTTTTGTGGCAGCTGATTTCAATCTCATAGGCTATGATCCTCACCAAAAAATTGAAATGAAGATGGCTGTTTAG 1497 0.4242 MRFKPEVSYSIAFPKRFTRNVGLQPDLPRRTYQAVVAATRDMGISKDGKMPWNLPSDLKFFQEITTTTSDSGKKNAVVMGRKTWESIPPEKRPLSGRLNVVLTRSGSFDIATAENVVICGSLSSAMELLAASPYCLSIEKVFLTGGGEIFREALNAPGCEAVHITEIEERIECDTFIPQIDTSMFQPWYSYFPLVEDNIRYSFTTFVRVRNSALESLSQNTHSDFDNSSDSRKFEVQKFSFLPKMIFERHEEYKYLRLVQEIISEGTTKDDRTGTGTLSKFGCQYFGVGLLKSFSGLSVVQQVLSISLTDREEGDLGPVYGFQWRHFGARYTDMHADYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNHPKPFPILKINPKKKDIDSFVAADFNLIGYDPHQKIEMKMAV* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0773 498 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 31 208 IPR001796 GO:0004146|GO:0046654
Amo13g0773 498 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 28 294 - -
Amo13g0773 498 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 303 498 - -
Amo13g0773 498 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 297 498 IPR036926 -
Amo13g0773 498 Gene3D Dihydrofolate Reductase, subunit A 15 209 IPR024072 -
Amo13g0773 498 TIGRFAM thym_sym: thymidylate synthase 311 498 IPR000398 GO:0004799|GO:0006231
Amo13g0773 498 CDD DHFR 34 207 IPR001796 GO:0004146|GO:0046654
Amo13g0773 498 CDD TS_Pyrimidine_HMase 255 451 IPR023451 -
Amo13g0773 498 PRINTS Thymidylate synthase family signature 375 390 IPR000398 GO:0004799|GO:0006231
Amo13g0773 498 PRINTS Thymidylate synthase family signature 431 448 IPR000398 GO:0004799|GO:0006231
Amo13g0773 498 PRINTS Thymidylate synthase family signature 349 368 IPR000398 GO:0004799|GO:0006231
Amo13g0773 498 PRINTS Thymidylate synthase family signature 393 419 IPR000398 GO:0004799|GO:0006231
Amo13g0773 498 PANTHER THYMIDYLATE SYNTHASE 1 28 294 IPR045097 GO:0016741
Amo13g0773 498 PANTHER THYMIDYLATE SYNTHASE 1 303 498 IPR045097 GO:0016741
Amo13g0773 498 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 204 498 IPR036926 -
Amo13g0773 498 Pfam Dihydrofolate reductase 33 207 IPR001796 GO:0004146|GO:0046654
Amo13g0773 498 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 241 296 IPR036926 -
Amo13g0773 498 PIRSF DHFR-TS 300 498 IPR012262 GO:0004146|GO:0004799|GO:0006730
Amo13g0773 498 PIRSF DHFR-TS 18 297 IPR012262 GO:0004146|GO:0004799|GO:0006730
Amo13g0773 498 ProSitePatterns Thymidylate synthase active site. 360 388 IPR020940 GO:0004799|GO:0006231
Amo13g0773 498 Pfam Thymidylate synthase 311 498 IPR023451 -
Amo13g0773 498 SUPERFAMILY Dihydrofolate reductase-like 26 209 IPR024072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0773 Amo-Chr13 9569458 9572983 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0773 K13998 - gmx:100786311 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0773 13 9569458 9572983 Amo13g0773 13 9569458 9572983 ECH