Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0742 ATGGAATCTGCATGTATGGCAATGAAAACCAATCCTCATTGCCTTCATCAAGAAAATGGATTCTTAGGTGAAAGGATCAAAGGGGGTGTCAACTACAGTCCCTGGATCATCAAAGAGAAGAAGAAGAAGATGATCAATAAGGCCAAACCTTCTGTTGTATCTTCTGTTCTTACATCAGAAACTGCAAAAGAATCTTTGACAATTCAAATGCCATCTTTTCTGAGAAGAAAAGCTGATCCAAAAAATGTAGTCTCAATCATATTGGGGGGTGGTCCTGGTGCTCAACTTTATCCAATCACAAAAAGAACAGCCACACCTGCTGTTCCTGTTGGTGGTTGCTACAGGCTTATAGACATACCAATGAGCAATTGCATCAACAGTGGCATCAACAAGATATTTGTGTTAACACAGTTCAACTCTGCATCCCTCAACCGGCACATAGCTCGCACCTACTTTGGAAATGGCATCAACTTTGGAGATGGATATGTTGAGGTCCTGGCAGCTACCCAAACAGCTGGTGAAGCTGGAAATAAGTGGTTCCAAGGAACAGCAGATGCTGTGAGGCAATTCACTTGGGTGTTCGAGGATGCTAAGCACACAAATGTTGAGAATGTTTTGATCTTGGCTGGTGATCATTTATACAGAATGGATTACATGGACCTTGTGCAGAGTCATGTAGATAGAAATGCAGATATCACAGTTTCATGTGCTGCTGTAGGAGACAGCCGCGCATCGGATTACGGGTTGGTCAAGGTTGATGGCAGAGGTAGGATCATCCATTTTTCAGAGAAACCAAAGGGTGCTGATCTGAAATCAATGCAAGTAGATACTTCTATTATGGGGTTGTCACACCAAGATGCAAAGAAATCACCATATATTGCCTCTATGGGGGTTTATGTATTCAAGACAGAGGTTTTACTCAAGCTTCTCAAATGGAGATATCCAACATCCAATGACTTTGGATCCGAAATCATTCCTGCAGCTGTCGGGGAGCACGATGTTCAAGCATATTTTTTTGGAGACTATTGGGAAGACATTGGAACAATCAAATCCTTTTATGATGCTAACATGGCTCTTACTGAAGAGAATCCAATGTTCAAATTCTATGACCCCAAGACACCTATTTACACATCTCCAAGATTCCTACCACCAACCAAGATTGATAAATGCCGGATTGTGGATGCAATCATCTCCCATGGATGTTTCCTGAGGGAATGTACTGTCCAACATTCCATTGTGGGCGAGCGATCGCGTTTGGATTATGGAGTTGAACTCCTGGACACTGTAATGATGGGAGCAGACTATTACCAAACGGAATCTGAAATCGCCGCGCTTTTGGCCGAAGGGAAGGTTCCCATTGGGATTGGAAAGAACACCAAGATTAGGAACTGCATAATTGACAAGAATGCAAGGATTGGGAAAGATGTGATCATCATGAACAAAGATGACCAACCGTCAGCAAGTTTGGAAGGTCAGCAAAGTGCCACATGGCAAAACTAA 1500 0.4273 MESACMAMKTNPHCLHQENGFLGERIKGGVNYSPWIIKEKKKKMINKAKPSVVSSVLTSETAKESLTIQMPSFLRRKADPKNVVSIILGGGPGAQLYPITKRTATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGYVEVLAATQTAGEAGNKWFQGTADAVRQFTWVFEDAKHTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLVKVDGRGRIIHFSEKPKGADLKSMQVDTSIMGLSHQDAKKSPYIASMGVYVFKTEVLLKLLKWRYPTSNDFGSEIIPAAVGEHDVQAYFFGDYWEDIGTIKSFYDANMALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELLDTVMMGADYYQTESEIAALLAEGKVPIGIGKNTKIRNCIIDKNARIGKDVIIMNKDDQPSASLEGQQSATWQN* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0742 499 Gene3D Hexapeptide repeat proteins 381 498 - -
Amo13g0742 499 SUPERFAMILY Nucleotide-diphospho-sugar transferases 81 476 IPR029044 -
Amo13g0742 499 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 294 304 IPR005836 GO:0005978|GO:0008878
Amo13g0742 499 CDD LbH_G1P_AT_C 383 487 - -
Amo13g0742 499 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 179 187 IPR005836 GO:0005978|GO:0008878
Amo13g0742 499 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 483 IPR011831 GO:0005978|GO:0008878
Amo13g0742 499 Pfam Nucleotidyl transferase 85 361 IPR005835 GO:0009058|GO:0016779
Amo13g0742 499 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 1 483 - -
Amo13g0742 499 CDD ADP_Glucose_PP 86 346 - -
Amo13g0742 499 SUPERFAMILY Trimeric LpxA-like enzymes 377 483 IPR011004 -
Amo13g0742 499 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 83 479 IPR011831 GO:0005978|GO:0008878
Amo13g0742 499 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 69 380 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0742 Amo-Chr13 9145455 9149785 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0742 K00975 - gmx:100808791 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0742 13 9145455 9149785 Amo13g0742 13 9145455 9149785 ECH