Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0716 ATGTCCCTTTCTCAACCAAAAATGTCTGTTGCTGAGCTCAAGGAGCGTCACTTAGCTGCCACTGACACACTCAACAATCTCAAACAACGTTTAAACCATACACGCCGTTCTTTGCTTGATACTGATCTTGCTGGGTATGCGAGGTCTCAGGGTAAGAGTCCTGTGACTTTTGGACCTACTGATCTGGTTTGCTGTAGAACTTTGCAGGGCCATACAGGAAAGGTGTATTCATTAGATTGGACATCTGAGAGGAATCGGATTGTTAGTGCATCCCAAGATGGTCGSTTAATTGTGTGGAATGCTCTAACAAGGCAGAAAATCCACGCCATAAAGCTTCCTTGTGCATGGGTCATGGCAACTGCSTTCTCACCAACTGGTCAGTCAATTACATGTGGTGGACTTGACAGTGTTTGCTCTATTTTCAACCTGAATTCCGCCACCGACAAGGATGGGAATCTACCTGTTTCCMGGACGCTTTGTGGACATAAGGGTTACATTTCATCTTGTCAGTATGTTCCTGACGAAGACACTCACTTAATTACTGGTTCTGGTGATCAGACTTGTGTTCTATGGGATATTACTACCGGCCTTAAAACTTCTGTCTTTGGTGGTGAATTTCAATCTGGACATACTGCAGATGTACTTAGCATCTCCATTAACGGATCCAACTCAAGAATGTTTGCATCTGGTTCTTGTGACGCCACTGCTCGATTGTGGGATACACGTATGGCAAGTCGAGCAGTTCGGACATTCCATGGGCATGAAGGAGATGTTAATTCGGTCAAGCTCTTTCCAGATGGAAATAGATTCGGAACTGGCTCGGAGGACGGAACATGCAGATTGTTTGACATTCGGACTGGACAYCAACTTCAAGTATACTGTCAGAAGCACAGTGACAATGAAACACCACCCGTGACCTCCATCGCGTTCTCCATATCAGGAAGACTCCTTTTTGCYGGATACACAAATGGAGATTGCTATGTATGGGACACTTTGTTGGCAAAGGTGGTGTTGAATTTAGGGTCTCTTCAAGACTCTCATGAGGGCAGGATCAGCTGTTTAGGTCTGGCAGCTGATGGAAGTGCCTTGTGTACAGGAAGTTGGGACACAAACCTTAAGATATGGGCATTTGGAGGGCATAGGAGGATGATTTGA 1155 0.4528 MSLSQPKMSVAELKERHLAATDTLNNLKQRLNHTRRSLLDTDLAGYARSQGKSPVTFGPTDLVCCRTLQGHTGKVYSLDWTSERNRIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMATAFSPTGQSITCGGLDSVCSIFNLNSATDKDGNLPVSRTLCGHKGYISSCQYVPDEDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFASGSCDATARLWDTRMASRAVRTFHGHEGDVNSVKLFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYCQKHSDNETPPVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQDSHEGRISCLGLAADGSALCTGSWDTNLKIWAFGGHRRMI* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 68 109 IPR001680 GO:0005515
Amo13g0716 384 SUPERFAMILY WD40 repeat-like 61 375 IPR036322 GO:0005515
Amo13g0716 384 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 8 380 IPR016346 GO:0007165
Amo13g0716 384 Gene3D - 18 376 IPR015943 GO:0005515
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 68 100 - -
Amo13g0716 384 ProSitePatterns Trp-Asp (WD) repeats signature. 179 193 IPR019775 -
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 292 IPR001680 GO:0005515
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 201 IPR001680 GO:0005515
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 375 IPR001680 GO:0005515
Amo13g0716 384 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 8 380 - -
Amo13g0716 384 PRINTS G protein beta WD-40 repeat signature 87 101 IPR020472 -
Amo13g0716 384 PRINTS G protein beta WD-40 repeat signature 179 193 IPR020472 -
Amo13g0716 384 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Amo13g0716 384 CDD WD40 64 376 - -
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 242 - -
Amo13g0716 384 SMART WD40_4 336 376 IPR001680 GO:0005515
Amo13g0716 384 SMART WD40_4 199 240 IPR001680 GO:0005515
Amo13g0716 384 SMART WD40_4 152 192 IPR001680 GO:0005515
Amo13g0716 384 SMART WD40_4 244 283 IPR001680 GO:0005515
Amo13g0716 384 SMART WD40_4 286 330 IPR001680 GO:0005515
Amo13g0716 384 SMART WD40_4 61 100 IPR001680 GO:0005515
Amo13g0716 384 SMART WD40_4 103 142 IPR001680 GO:0005515
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 384 - -
Amo13g0716 384 PIRSF GNBP_B 4 378 - -
Amo13g0716 384 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Amo13g0716 384 Pfam WD domain, G-beta repeat 208 240 IPR001680 GO:0005515
Amo13g0716 384 Pfam WD domain, G-beta repeat 248 283 IPR001680 GO:0005515
Amo13g0716 384 Pfam WD domain, G-beta repeat 64 100 IPR001680 GO:0005515
Amo13g0716 384 Pfam WD domain, G-beta repeat 346 375 IPR001680 GO:0005515
Amo13g0716 384 Pfam WD domain, G-beta repeat 157 192 IPR001680 GO:0005515
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 287 - -
Amo13g0716 384 Coils Coil 10 30 - -
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 249 IPR001680 GO:0005515
Amo13g0716 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 196 - -
Amo13g0716 384 PRINTS Beta G protein (transducin) signature 68 84 IPR001632 -
Amo13g0716 384 PRINTS Beta G protein (transducin) signature 87 101 IPR001632 -
Amo13g0716 384 PRINTS Beta G protein (transducin) signature 106 121 IPR001632 -
Amo13g0716 384 PRINTS Beta G protein (transducin) signature 124 141 IPR001632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0716 Amo-Chr13 8801637 8804743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0716 179 375 Miscellaneous Gene Families AT5G08390 29.949 7.46e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0716 K04536 - gmx:100794776 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0716 13 8801637 8804743 Amo13g0716 13 8801637 8804743 ECH