Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0713 ATGGAGGAGAAACGTCGCGATGCCGCACCTCCACCTCCTTCCGCCACCGCCGATTCACCCGCATCTGAGCCTACATCCACGCGCCGCCGTGCCGGAGCTCAGAAGCGCAAGGCCAGCTCCCTCTCCGGAAATTCCTCCTCCTCCACGCCTTCTAAGCGCGTCACTCGCGACAAGCCCTCACCTCTCCACCACCACACTCCTCCCCTTCACCACAATGGTCCTCTCACTAGGGCGCGTCAAATCCCCGCCTCCGCCGCCGCTGCGTCGTCTTCCGCGCCCGGTTCTGCCGCTGCTTCTGCTTCTGCTCCGCCGGCTGTGAAGCACTCGGAGCGCKGTTTAGGCGCGGACGCGGTGGCGCTGGCTGAGGAGATCAGGAAGGCGAGCGAGCGGGAGTCTCTGGAAGCTTCGATGGAAGCTGCKTTCGAAGCTATCAGATCTCGTGGAACTGATTCTCATGTCGTTCCGAGTCATTGCGGTTGGTTTTCATGGACTGATATTCATCCAATTGAAAAGTTTATGATGCCTTCTTTCTTTAATGGCAAAACTGAAAGTCGTACTCCTGATATATACATGGAGATAAGGAATTGGGTAATGAAGAAGTTTCATGCAAATCCCAACACACAAATMGAAGTGAAAGATTTGTCAGAGATTAATGTTGGAGACTTGGATTCTAGGCAAGAGATAATGGAGTTTTTGGACTATTGGGGTCTAATTAATTACCACCCTTTCCCATCTATGGGTTCTGCTGATGCCAGTACAAGTGATGATGGGGAGGCGGAAAGGAATTCCTTGCTTGAAAAATTGTACTATTTTGGAATGCACCAATTGYGTCCGCCTGTTGTTCAAAAGGCTAGCCTAATGACTCAAGCTACGACCTCTGGCTTGTTTCCGGAGTCTGCAATTGCTGAAGAATTGGTGAAACAAGAGGGGCCAGCAGTTGAGATGCTTGAGTATCATTGCAACTCTTGTTCGGCTGATTGTTCCCGCAAGCGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGTTCCGACTGCTTTAGTAATAGAAAGTTTGGCTCCGGGATGTCCTCATCGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGAGTTAGTGGTGGAAAATGGACTGATCAGGAAACCCTCTTGCTTCTTGAAGCACTAGAACTGTATAAAGAAAATTGGAACGAAATTGCAGAGCACGTTGGCACAAAATCAAAAGCTCAATGCATTTTGCACTTTGTTCAAATGCCTATTGAGGATGCCTTTATGGATTGTAAAGATGATGTTGAAACCAGTTGTAAAGAAACAGCAGATCCAGCTGCAACTAACAATGATGCATCTGCAAATAAAGATGCTTCTGAATGTAATGAGAATAACACTGGTGATAATACYGAAGGCCATGGTGAAGCTTCTAAGTCTGAAGAGGTTAAGGCAAAAGTAGATCAGGAGATTCCGAATCAAGAGGATGGTGTGGGTGAGAAAACCTGTGAGGGAACTTCTAAATCAGAAGATGCCAATAAAGTCAAAATTTGTCCAGAAGAAGGCAATGACTGTGCCCTGATTGCTCTCAAGGAAGCATTTGTAGCTGTTGGTTATTCTCCTGAACCTGAAGGCCCATCTTCATTTGCTGAAGTTGGTAATCCTGTCATGGCATTGGCAGCTTTCCTCGCACGCTTGGTGGGTCCTGATGTGGCTGTTGCTTCAGCTCATACCGCCTTAAAATCCATTTTGGGAAATTCTCCTGGCACCGAGCTTGCTGCAAGGAATTCTTTTATTCTGGGAGATCAACCAGATAATAAGGAACCAACTACGAGGGATTCTAAAAATGAGGAAGGCCAGGATGGGGTAAATGCAAAGCAGGATAAACCAATCTCAGAGGACAAAGATTTAGCGAGTGATCACAACAACATGGAAATTGAAGATAATGTTCCAGAAGATAAGAAACAGCTAGCTTCTGAAAATGGAGACTTGGAAAAATCAAATACTTCAAAGGAGCAAGCTATTATCAACCATGAGGGTGGRCTTGACAATGGTAAYGGCTCCAGCAATTCGAAGCTACCCAATGATCAAGCACCATCCACTCTGCATGATTCTGGTGGTTCAACATCCAAGGCTGAAAATCCACCTAGTTCTGAGGAGCTACAAGAGCGAAGTTTGAATAAAGAACTGTCCCATTCAGAAGTGGAAACAAAGGACATGCCTGCTTCGGACTTGTGTCTGTCGGACAAGAATGGTCTTCGGCAGTCTGTTAAAGCTAATCTTGCAGGAAACCATCCAGAACCAGTAGAGAAAACAAAGAATACTGATGTTGTGTCTGATTCTGTGCCCTCAGACAAGGACAAGTCACAAACGCTATCTTCAAGTTCTGCTGGTGACACTCTGCAAAAGAAAGACTCCGTAATGGATGTTGAGCTGCCAGAGAAAAGTGAATCTCAGCCACCATGTGCTTCAGTTTCAACCGAACATAATGGGAAAGAAAATGATGTGGATATGATGTCTCCTTCGCATCCAGTTGGATCAATTTCTGGTGCTGAAAATGGCACAAAAGCAGGCAAAGATCAAACAGAGAATGGTGCAAAAGGAGAAGACGATAGGACGGAGAAGAAAGATGATAACAATTTTGAGAAAGTAAAATGTGCTGCAGTCACAACACTTGCTGCAGCAGCAGTAAAGGCAAAAATTCTAGCAAATGAGGAAGAGGACCAAATCCGAGAACTTGCTTCTTCATTGATAGAAAAGCAGTTGCATAAGTTGCAAGCAAAGTTGGCTTTTTTCAGCGATATGGAGAACTTAGTAATGAGGGTAAGGGAACATTTGGAGCGGTCACGGCATAAGCTTTTCCATGAGCGTGCTATGATAATTGCTTCTCGGCTTGGTATACCACCTTCCTCATCTAGAGGTGCACCACCAAACTTGCCAGCCAATAGAATTCCTATGAATTTTGCAAACTCGCTCCCAAGACCACAAATGATGATGAATCCCCAAAGACCACCAATTCCTCGACCTTTTAGCACGGCAGCTGCTACCATTCCAAACCCATTAGCATCTGCAACTGCAGCAGGAAACGCAGTTCGGCCACCGAGCCAGGAAAAACTTTCGTCTGTTGGGACAAAATAA 3123 0.4585 MEEKRRDAAPPPPSATADSPASEPTSTRRRAGAQKRKASSLSGNSSSSTPSKRVTRDKPSPLHHHTPPLHHNGPLTRARQIPASAAAASSSAPGSAAASASAPPAVKHSERXLGADAVALAEEIRKASERESLEASMEAAFEAIRSRGTDSHVVPSHCGWFSWTDIHPIEKFMMPSFFNGKTESRTPDIYMEIRNWVMKKFHANPNTQIEVKDLSEINVGDLDSRQEIMEFLDYWGLINYHPFPSMGSADASTSDDGEAERNSLLEKLYYFGMHQLXPPVVQKASLMTQATTSGLFPESAIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCSDCFSNRKFGSGMSSSDFILMEPAEVAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIEDAFMDCKDDVETSCKETADPAATNNDASANKDASECNENNTGDNTEGHGEASKSEEVKAKVDQEIPNQEDGVGEKTCEGTSKSEDANKVKICPEEGNDCALIALKEAFVAVGYSPEPEGPSSFAEVGNPVMALAAFLARLVGPDVAVASAHTALKSILGNSPGTELAARNSFILGDQPDNKEPTTRDSKNEEGQDGVNAKQDKPISEDKDLASDHNNMEIEDNVPEDKKQLASENGDLEKSNTSKEQAIINHEGGLDNGNGSSNSKLPNDQAPSTLHDSGGSTSKAENPPSSEELQERSLNKELSHSEVETKDMPASDLCLSDKNGLRQSVKANLAGNHPEPVEKTKNTDVVSDSVPSDKDKSQTLSSSSAGDTLQKKDSVMDVELPEKSESQPPCASVSTEHNGKENDVDMMSPSHPVGSISGAENGTKAGKDQTENGAKGEDDRTEKKDDNNFEKVKCAAVTTLAAAAVKAKILANEEEDQIRELASSLIEKQLHKLQAKLAFFSDMENLVMRVREHLERSRHKLFHERAMIIASRLGIPPSSSRGAPPNLPANRIPMNFANSLPRPQMMMNPQRPPIPRPFSTAAATIPNPLASATAAGNAVRPPSQEKLSSVGTK* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0713 1040 MobiDBLite consensus disorder prediction 857 871 - -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 439 468 - -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 841 855 - -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 717 734 - -
Amo13g0713 1040 SUPERFAMILY Homeodomain-like 159 241 IPR009057 -
Amo13g0713 1040 PANTHER SWI/SNF COMPLEX-RELATED 45 1004 - -
Amo13g0713 1040 SMART zz_5 314 358 IPR000433 GO:0008270
Amo13g0713 1040 MobiDBLite consensus disorder prediction 590 871 - -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 770 797 - -
Amo13g0713 1040 Pfam SWIRM-associated region 1 885 962 IPR032451 -
Amo13g0713 1040 Gene3D - 372 423 - -
Amo13g0713 1040 ProSiteProfiles SANT domain profile. 372 423 IPR017884 -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 964 1040 - -
Amo13g0713 1040 ProSiteProfiles Zinc finger ZZ-type profile. 315 369 IPR000433 GO:0008270
Amo13g0713 1040 ProSiteProfiles Myb-like domain profile. 375 419 IPR001005 -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 37 55 - -
Amo13g0713 1040 ProSitePatterns Zinc finger ZZ-type signature. 320 346 IPR000433 GO:0008270
Amo13g0713 1040 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 375 411 IPR017930 -
Amo13g0713 1040 SUPERFAMILY RING/U-box 310 373 - -
Amo13g0713 1040 ProSiteProfiles SWIRM domain profile. 152 249 IPR007526 GO:0005515
Amo13g0713 1040 Pfam Myb-like DNA-binding domain 375 417 IPR001005 -
Amo13g0713 1040 CDD SANT 393 418 IPR001005 -
Amo13g0713 1040 Gene3D - 312 360 IPR043145 -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 601 662 - -
Amo13g0713 1040 Pfam SWIRM domain 155 240 IPR007526 GO:0005515
Amo13g0713 1040 SUPERFAMILY Homeodomain-like 372 426 IPR009057 -
Amo13g0713 1040 CDD ZZ_RSC8 318 362 IPR041984 -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 677 716 - -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 1 109 - -
Amo13g0713 1040 Pfam Zinc finger, ZZ type 317 352 IPR000433 GO:0008270
Amo13g0713 1040 MobiDBLite consensus disorder prediction 439 501 - -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 83 97 - -
Amo13g0713 1040 Gene3D - 158 243 IPR036388 -
Amo13g0713 1040 SMART sant 373 421 IPR001005 -
Amo13g0713 1040 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 45 1004 - -
Amo13g0713 1040 MobiDBLite consensus disorder prediction 469 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0713 Amo-Chr13 8768560 8774876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0713 318 415 EF-hand Containing Proteins AT3G07740 38.318 5.56e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0713 K11649 - gmx:100799723 1287.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0713 13 8768560 8774876 Amo13g0713 13 8768560 8774876 ECH