Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0675 ATGATAGTTGTTTTTTTATTTAAAAAAAGATTATTTATAAAAATATTTATTTTTCTAACTAAATTTTATTTAATTAAAGTTTTGTTTAGAGTAGAAGTGTTGAAGAAGCAAAGGAAGGAACTTTGGTACTCTCTCCCACTCTACCCTGCTGTGAACTCCTTCTTCAGCTGGGTTTTACGTTCTTCTTCTCAGTTCATAACAACATTAATGGAGATCGATTTCAATGAGTATCAGTTGCGCTGTGAACTCCGTGGCCACGAAGACGACGTTCGTGGAATATGCGTGTGCGGCAACGAGCGCATAGCGACGTCGTCGAGGGACAAAACCGTTAGGCTTTGGTCTCAGGACCCTTCTGAGAGACGCAAGTTCGTGTCTTCGAAGATTCTTTTGGGTCACACCAGCTTCGTTGGACCAATTGCATGGATTCCTCCCAACGACGAGTTCACAGAAGGTGGGGTTGTGTCAGGTGGAATGGACACACTCGTTTTGGTTTGGGACTTGAAGAGTGGTGAGAAGGTTCAAACCCTCAAAGGCCATTCTTTGCAGGTCACTAGCATTACATTGGATAATGGGGATATTGTTTCATCTTCTGTTGATTGTACCTTGAGACGGTGGAGAAATGGGCAATCTGTAGAGACATGGGAGGCTCACAAGGCACCTATCCAAGCTGTTATAAAGTTACCTTCAGGCGAGCTTGTTACAGGTTCAAGTGACACAACTTTGAAGCTTTGGAGAGGAAAAACTTGTTTACATACTTTCAATGGACATGCAGATACAGTTAGAGGATTGGCTGTGATGGCTGGCCTTGGGGTCCTATCCTCATCACATGATGGTTCTCTGAGATTATGGGCAGTAAGTGGTCAAGTGTTAATGGAGATGGTTGGCCATACTGCAATTGTTTATTCAGTTGATTCACATGCATCTGGACTTATCGTCAGTGGTAGTGAAGACCGATTTGCAAAAATATGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGTGTTTGGGATGCAAAGTTCATGGAAAATGGGGATATTGTGACAGCGTGTTCGGATGGAGTTGTACGCATTTGGACAGTTCATCCAGATAATATTGCTGACCAGCTTGAGCGTGATTTATACGCTTCTGAACTTTCTCAATACAAGACTAGTAGAAAAAGGGTTGGTGGATTGAAATTGGAAGAGTTACCCGGCTTGGAGGCACTGAAGATCCCAGGTACTAGTGATGGCCAGACAAAAGTAGTCAGAGAGGGGGATAATGGGGTGGCATATGCTTGGAACATGCCAGAACAGAAGTGGGATAAAATTGGTGAAGTTGTTGATGGACCGGAGGAATCAGGTCGCGCTTTCCACGATGGTGTTCAGTATGACTATGTATTTGATGTCGACATTGGAGATGGTATGCCTATCCGCAAGTTGCCATACAATCGATCAGATAATCCCTATGATGTTGCTGACAAATGGCTACTCAAGGAGAACCTTCCTCTTTCCTTCCGTGAACAAATTGTACAGTTCATACTTCAAAATACCGGACAAAAGGATATTACCTTTGATGCTTCATTTCGTGATCCTTACACTGGTGCCAATGCTTATGTACCAGGACAACCTTCACGAACATCTGATGCTTCTGCGAAACCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGGTTTTGATACAGCTCAGTTCGATGGGATCCTCAAAAAGATAACTGAATTCAACAGTGCTTTACAATCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAACTCGATGTTTCCAGACTGGGTGCCATTGTGAAAATTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTGCGGATGCTGATATATCCTTGTTGCTGAACTTGCTTCGGTCATGGCCAATTTCAATGATATTTCCTGTCATTGATCTTGTAAGGATGATAGTTCTTCATCCAGATGGGGCTACTATGCTTCACAAGCATTTTCAAGCTGAAAATGATATATTAATGGAAGTGATTAAAAAGGTCACTTCAAATTCATCAATTCCTGCAAATCTGTTGACCAGCATTCGTACTGTTACTAATCTTTTCAAGAATTCATGCTACTATGGCTGGTTGCAGAAACATCGCAGTGAGGTTCTTGATGCTTTCTCGAGTTGTAGTTCATCTCCTAACAAAAACTTGCAATTGTCCTATTCTACCTTGATACTCAATTATGCTGTTCTGTTAATTGAATCGAAAGATCAAGAAGGTCAATATCAAGTCTTATCAGCAGCACTTGAGATTGCCGAGGAAGGAAATGTAGAAGTTGATTCCAAATTCCGTGCTTTAGTTGCTGTTGGATCACTGATGCTTGAAGGTCTTGTTAAAAAGGCAGCGCTGGACTTCGATGTATTGAGCATTGCAAAAGCAGCAAAGGCTTCTAAGGAAGCCAAGCTTGCTGAAATTGGATCCGACATCGAGCTAGTAGCAAAGCAGAGTTGA 2484 0.4183 MIVVFLFKKRLFIKIFIFLTKFYLIKVLFRVEVLKKQRKELWYSLPLYPAVNSFFSWVLRSSSQFITTLMEIDFNEYQLRCELRGHEDDVRGICVCGNERIATSSRDKTVRLWSQDPSERRKFVSSKILLGHTSFVGPIAWIPPNDEFTEGGVVSGGMDTLVLVWDLKSGEKVQTLKGHSLQVTSITLDNGDIVSSSVDCTLRRWRNGQSVETWEAHKAPIQAVIKLPSGELVTGSSDTTLKLWRGKTCLHTFNGHADTVRGLAVMAGLGVLSSSHDGSLRLWAVSGQVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTVHPDNIADQLERDLYASELSQYKTSRKRVGGLKLEELPGLEALKIPGTSDGQTKVVREGDNGVAYAWNMPEQKWDKIGEVVDGPEESGRAFHDGVQYDYVFDVDIGDGMPIRKLPYNRSDNPYDVADKWLLKENLPLSFREQIVQFILQNTGQKDITFDASFRDPYTGANAYVPGQPSRTSDASAKPTFKHIPKKGMLGFDTAQFDGILKKITEFNSALQSDQEKQNLSLTELDVSRLGAIVKILKDTSHYHSSKFADADISLLLNLLRSWPISMIFPVIDLVRMIVLHPDGATMLHKHFQAENDILMEVIKKVTSNSSIPANLLTSIRTVTNLFKNSCYYGWLQKHRSEVLDAFSSCSSSPNKNLQLSYSTLILNYAVLLIESKDQEGQYQVLSAALEIAEEGNVEVDSKFRALVAVGSLMLEGLVKKAALDFDVLSIAKAAKASKEAKLAEIGSDIELVAKQS* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0675 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 244 IPR001680 GO:0005515
Amo13g0675 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 175 IPR001680 GO:0005515
Amo13g0675 827 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 73 823 - -
Amo13g0675 827 ProSitePatterns Trp-Asp (WD) repeats signature. 153 167 IPR019775 -
Amo13g0675 827 Gene3D - 73 378 IPR015943 GO:0005515
Amo13g0675 827 CDD WD40 79 361 - -
Amo13g0675 827 Pfam PFU (PLAA family ubiquitin binding) 408 516 IPR015155 -
Amo13g0675 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 83 114 IPR001680 GO:0005515
Amo13g0675 827 Gene3D - 446 521 IPR038122 -
Amo13g0675 827 Pfam WD domain, G-beta repeat 288 324 IPR001680 GO:0005515
Amo13g0675 827 Pfam WD domain, G-beta repeat 327 361 IPR001680 GO:0005515
Amo13g0675 827 Pfam WD domain, G-beta repeat 170 205 IPR001680 GO:0005515
Amo13g0675 827 Pfam WD domain, G-beta repeat 81 114 IPR001680 GO:0005515
Amo13g0675 827 Pfam WD domain, G-beta repeat 209 244 IPR001680 GO:0005515
Amo13g0675 827 Pfam WD domain, G-beta repeat 248 283 IPR001680 GO:0005515
Amo13g0675 827 Gene3D - 552 823 IPR011989 -
Amo13g0675 827 ProSiteProfiles PFU domain profile. 428 523 IPR015155 -
Amo13g0675 827 ProSiteProfiles PUL domain profile. 552 823 IPR013535 -
Amo13g0675 827 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 73 823 - -
Amo13g0675 827 Pfam PUL domain 554 819 IPR013535 -
Amo13g0675 827 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 83 114 - -
Amo13g0675 827 SUPERFAMILY WD40 repeat-like 74 373 IPR036322 GO:0005515
Amo13g0675 827 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Amo13g0675 827 PRINTS G protein beta WD-40 repeat signature 101 115 IPR020472 -
Amo13g0675 827 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Amo13g0675 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 283 IPR001680 GO:0005515
Amo13g0675 827 SMART WD40_4 76 114 IPR001680 GO:0005515
Amo13g0675 827 SMART WD40_4 207 245 IPR001680 GO:0005515
Amo13g0675 827 SMART WD40_4 169 206 IPR001680 GO:0005515
Amo13g0675 827 SMART WD40_4 246 284 IPR001680 GO:0005515
Amo13g0675 827 SMART WD40_4 325 362 IPR001680 GO:0005515
Amo13g0675 827 SMART WD40_4 286 324 IPR001680 GO:0005515
Amo13g0675 827 SMART WD40_4 122 166 IPR001680 GO:0005515
Amo13g0675 827 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 324 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0675 69 826 Acyl Lipid Metabolism Gene Families AT3G18860 72.464 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0675 K14018 - gmx:100816481 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0675 13 8254990 8263562 Amo13g0675 13 8254990 8263562 ECH