Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0667 ATGAGGCATTTGAGAGTGAGAGATGCTCTGGTGTACCATGATCATGTCCTTGCTATAAAATCTGGTTTGGCATCAAGCATTTTTACTTGTAATCAACTCATTCACAGCTACTCGAACCATGGCTTTGTTCAAGAGGCACACAAAGTGTTCGATGGAATGCATCAACGAAATGAATTCTCTTGGAATGCCATTATTATGGCCTACATAAAAGCACACAATTTGACTCGAGCACGATCACTTTTCGATTCTGCCTCCCACAAGGACTTGGTTGCTTACAATTCCATGTTGTCGGCTTATGTCGGCGCTGATGGTTATGAAACCGAGGCACTTGATTTCTTTGCTGCAATGCAATCTGCGCGCGACACGGTTGGGATTGATGAGATCACTTTGACAACCATGCTTAACTTGACTGCCAAGCTAGGCATGGGGTACCATGGGAAGCAAATACATTCATACATGGTGAAAACTGCAAATGATTCAAGCAAGTTTGCAACAAGCTCTCTTATTGACATGTACTCTAAATGTGGTTCTTTTCACGAAGCATGCAACGTGTTTACTGGTTGTGATGGGATGGTGGATTTGGTTTCAAAGAATGCAATGATTGCAGCTTGTTGTAGGGAACGAGAGATGGACATGGCTTTGAATCTGTTTTGGAAAAATCATGAATTAAATAACATTGTATCCTGGAATACATTGCTTGTAGGACATGCCCAGAATGGCTATATGGAGAAGGCACTTGCCTTGTTTGCCGAGATGATTGAAAATGGTATCGGCTGCGATGAACACACTTTGGCTAGTGTTTTGAGTACCTGCTCTGGTTTAAAGTGCTTGAAATTAGGCAAGTGTGTTCATGCTTGGGTGTTGAGAAATGGTTGCATTTCAAATCAATTTATTAGCAGTGGCATTGTTGATCTCTACTGTAGGTGTGGGAATATTAGATATGCGGAGTTAGTCTATGCAGGAATTGGGATTGAGAATCCATTTGCAGTTTCTTCATTGATTACATGCTACTCATCTCAAGGTAACATGATAGAAGCTCAAAGGCTCTTCAATTCACTTACAGAAAGAAGTTATGTTGCCTGGACAGCTTTATTTTCAGGTTATGTCAAATCACAACAATGCGAGGCAGTCTTCAAACTCTTCAGAGAGTATATATCTACAAAAGCTCTAGTTCCTCAAGCGATGATCATTATTCGTGTGCTTGGCGCATGTACAATGCAAGCAGCCCTTAGTTTGGGAAGGCAGATTCATGCTTACATCTTGAGAATGAAATTCCTCATGGATGAGAAATTGCTGGGTGCTTTGGTTGATATGTACTCAAAATGTGGGAATATTATGCATGCTGAAAAAATCTTTAGACTAGTTAACAATAGCAACAGAGATGCAATCTTGTATAATATTATGATAGCTGGTTATGCTCACCATGGGCTTGAAAATAAAGCTATTCAGCTTTTTGAGGAGATGTCGAAGAAAAGTGTCAAGCCTGATGCAATTACTTTTGTTGCACTCCTTTCGGCTTGTCGGCATCGTGGATTAGTAGAACTAGGAGAAAATATTTTCATTTCCATGGAAGAAGAGTACAATGTAGTGCCTGATAATTACCACTATGCATGTATTGTTGATATGTATGGAAGGGCTAATCAACTAGAAAAGGCAGTAGAATTTATTAGGAAGATCCCTATACAGATAGATGCTACAATCTGGGGTGCATTTCTTAATGTTTGTCAAATGAGCAACAATACAGACCTTGTCAAACAGGCAGAAGAGAAACTGTTAAAGATTGATGTCGATAATGGGTCTCGGTATGTGCAATTGGCCAATCTTTATGCTGCCAAAGGGAAATGGGATGAGAAGGGAAGAATAAGAGAGAAAATGAGAGAAAAAGAGGCTAAGAAGGTTGCTGGTTGCAGTTGGATATATGTGGCAGATGGTATTCATGTATTCACTTCTGGTGATGCATCTCATACAAAAGGAGATGCAATATATGCAACTTGA 1995 0.4 MRHLRVRDALVYHDHVLAIKSGLASSIFTCNQLIHSYSNHGFVQEAHKVFDGMHQRNEFSWNAIIMAYIKAHNLTRARSLFDSASHKDLVAYNSMLSAYVGADGYETEALDFFAAMQSARDTVGIDEITLTTMLNLTAKLGMGYHGKQIHSYMVKTANDSSKFATSSLIDMYSKCGSFHEACNVFTGCDGMVDLVSKNAMIAACCREREMDMALNLFWKNHELNNIVSWNTLLVGHAQNGYMEKALALFAEMIENGIGCDEHTLASVLSTCSGLKCLKLGKCVHAWVLRNGCISNQFISSGIVDLYCRCGNIRYAELVYAGIGIENPFAVSSLITCYSSQGNMIEAQRLFNSLTERSYVAWTALFSGYVKSQQCEAVFKLFREYISTKALVPQAMIIIRVLGACTMQAALSLGRQIHAYILRMKFLMDEKLLGALVDMYSKCGNIMHAEKIFRLVNNSNRDAILYNIMIAGYAHHGLENKAIQLFEEMSKKSVKPDAITFVALLSACRHRGLVELGENIFISMEEEYNVVPDNYHYACIVDMYGRANQLEKAVEFIRKIPIQIDATIWGAFLNVCQMSNNTDLVKQAEEKLLKIDVDNGSRYVQLANLYAAKGKWDEKGRIREKMREKEAKKVAGCSWIYVADGIHVFTSGDASHTKGDAIYAT* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0667 664 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Amo13g0667 664 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Amo13g0667 664 TIGRFAM PPR: pentatricopeptide repeat domain 28 57 IPR002885 -
Amo13g0667 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Amo13g0667 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Amo13g0667 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
Amo13g0667 664 SUPERFAMILY TPR-like 325 625 IPR011990 GO:0005515
Amo13g0667 664 Pfam PPR repeat family 461 507 IPR002885 -
Amo13g0667 664 Pfam PPR repeat family 225 271 IPR002885 -
Amo13g0667 664 Gene3D Tetratricopeptide repeat domain 146 278 IPR011990 GO:0005515
Amo13g0667 664 Gene3D Tetratricopeptide repeat domain 279 411 IPR011990 GO:0005515
Amo13g0667 664 Gene3D Tetratricopeptide repeat domain 14 145 IPR011990 GO:0005515
Amo13g0667 664 PANTHER - 193 322 - -
Amo13g0667 664 PANTHER - 15 70 - -
Amo13g0667 664 PANTHER - 62 218 - -
Amo13g0667 664 PANTHER - 326 641 - -
Amo13g0667 664 Pfam E motif 579 639 IPR046848 -
Amo13g0667 664 Pfam PPR repeat 434 453 IPR002885 -
Amo13g0667 664 Pfam PPR repeat 28 57 IPR002885 -
Amo13g0667 664 Pfam PPR repeat 359 383 IPR002885 -
Amo13g0667 664 Pfam PPR repeat 330 356 IPR002885 -
Amo13g0667 664 Pfam PPR repeat 166 185 IPR002885 -
Amo13g0667 664 Pfam PPR repeat 196 217 IPR002885 -
Amo13g0667 664 Pfam PPR repeat 59 82 IPR002885 -
Amo13g0667 664 Gene3D Tetratricopeptide repeat domain 480 654 IPR011990 GO:0005515
Amo13g0667 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0667 Amo-Chr13 8205236 8207230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0667 22 662 Glycoside Hydrolase AT3G49170 29.647 3.15e-91 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0667 - - gmx:100803987 1041.95