Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0655 ATGAAAAATACAAAAGGTGGTGGCGGCGGCGGCGATAGTGGTGGCACAATGTTAGTAGAACAACGAAACGGCGTCGTTCGCCGGCCTAAGCTAGGAGCTATATTTCGTAGCTCCGATCCAACCTCGCTCTACACACCCAACCACTACGACGAAGATCACAACCGCCGCGTGACCAGCGGCTCCGCCCAAGCGGACAGCAGCAGCAGCAGCAATAACGCCTCTCCTTACAACATGTCTCCATACAACAACACCACCAGCAGCGTCTCTTCCTCTCCATACAACAAATCGCCATGGCTCTTACCTTCTATAAACTTCTTCCACCAAAACGAAATCGAAAACGACGCGTTTTACTCCCAAAACGGCCTCATCGGATCCATCGTTCGCGAAGAAGGACACATCTACTCCCTCGCCGTCAACGGAAGCTTGTTGTACACAGGCTCTGAGAGCAAGAACATTAGGGTTTGGAAAGATCTCAAGGACTTCGCCGGATTCAAATCCAACAGCGGATTCGTCAAAACGATCGTAATCTCCGACGAGAAAATCTACACCGGTCACCAAGACGGCAAGATCAGAGTCTGGAAGGTTTCTAAGAAGAATCCAAGCTCATACAAGCGCGTTGGAAGCTTGCCAACGTTTAAGGAATACTTTAAGAGTTCAATGAACCCTAAGAATTACGTCGAAGTTCGGAGGAATCGAAGCGCCGTTAAGGTGAAGCATTTCGACGCCGTTTCGACCTTGAGCTTGGACGAAGAAGCAGGATTGTTATATTCTGGATCTTGGGATAAGACGGTTAAGGTTTGGAGAATCTCCGATTCCAAGTGCTTAGAATCCATTGACGCCCACGAGGACGCCGTGAATTCGGTGGTTGCGGCGTTTGGGGCGTTTGTGCTCACCGGCGCCGCCGATGGGACAGTCAAGATGTGGCGGAGGAAGCAAGTGAGTGAGAAGAAGACGAGGCACGTGATCGATAGAATTTTGCTGAGGCAGGAGAACGCCGTCACGGCGCTGGCGGTGAACCGGTTGGCGGCGGTGGTTTACGCCGCGTCGTCCGACGGATTGGTGAATTTCTGGGAGCAGGATCTGAAGGGCGGCGAGCTGTGTCACGGCGGAGTTTTGAGAGGACATAAACTCGCTGTGCTTTGCCTTGCCGTGGCCGGAAACTTGGTGTTCAGCGGCTCTGCCGATAAGAATATATGCGTGTGGAAGCGCAACGAGAGCGGCATCCACACGTGTCTTTCGGTGCTCTCCGGCCACACTGGGCCGGTGAAGTGTCTCACCGTCAAAGAAGAGGAAGACCGCCGCCAAGGTCAACGCCGAAAAGGTGACCAGCGATGGATTATTTACACTGGGAGCTTGGATAACTCTGTGAAGGTGTGGCGCGTGTCTGAGAACGCGCCGGAGTTGAAGATGATCCAAGGGTGGCCATTGCCGAGTCATGGCGGCACACCGGCCCGTGATAATTCTTCCACGGCAGGGTCGAGTCCGTCGTCTTTGCCGGTGACAAGTGCAATTAGCGGCAATTTCAACAATAATCTACAAATAATTATCAATAATAACAATGATGTCTACCCAAAAAGGTTGCAGTCTCAAAGTTAG 1596 0.5213 MKNTKGGGGGGDSGGTMLVEQRNGVVRRPKLGAIFRSSDPTSLYTPNHYDEDHNRRVTSGSAQADSSSSSNNASPYNMSPYNNTTSSVSSSPYNKSPWLLPSINFFHQNEIENDAFYSQNGLIGSIVREEGHIYSLAVNGSLLYTGSESKNIRVWKDLKDFAGFKSNSGFVKTIVISDEKIYTGHQDGKIRVWKVSKKNPSSYKRVGSLPTFKEYFKSSMNPKNYVEVRRNRSAVKVKHFDAVSTLSLDEEAGLLYSGSWDKTVKVWRISDSKCLESIDAHEDAVNSVVAAFGAFVLTGAADGTVKMWRRKQVSEKKTRHVIDRILLRQENAVTALAVNRLAAVVYAASSDGLVNFWEQDLKGGELCHGGVLRGHKLAVLCLAVAGNLVFSGSADKNICVWKRNESGIHTCLSVLSGHTGPVKCLTVKEEEDRRQGQRRKGDQRWIIYTGSLDNSVKVWRVSENAPELKMIQGWPLPSHGGTPARDNSSTAGSSPSSLPVTSAISGNFNNNLQIIINNNNDVYPKRLQSQS* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0655 531 Pfam Nucleoporin Nup120/160 128 285 - -
Amo13g0655 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 318 IPR001680 GO:0005515
Amo13g0655 531 MobiDBLite consensus disorder prediction 482 498 - -
Amo13g0655 531 MobiDBLite consensus disorder prediction 471 498 - -
Amo13g0655 531 Gene3D - 117 215 IPR015943 GO:0005515
Amo13g0655 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 277 IPR001680 GO:0005515
Amo13g0655 531 MobiDBLite consensus disorder prediction 59 87 - -
Amo13g0655 531 MobiDBLite consensus disorder prediction 1 87 - -
Amo13g0655 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 273 - -
Amo13g0655 531 CDD WD40 130 460 - -
Amo13g0655 531 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 474 IPR045182 -
Amo13g0655 531 SUPERFAMILY WD40 repeat-like 129 470 IPR036322 GO:0005515
Amo13g0655 531 Gene3D - 325 526 IPR015943 GO:0005515
Amo13g0655 531 Pfam WD domain, G-beta repeat 410 459 IPR001680 GO:0005515
Amo13g0655 531 Pfam WD domain, G-beta repeat 370 402 IPR001680 GO:0005515
Amo13g0655 531 Gene3D - 229 324 IPR015943 GO:0005515
Amo13g0655 531 SMART WD40_4 157 194 IPR001680 GO:0005515
Amo13g0655 531 SMART WD40_4 271 309 IPR001680 GO:0005515
Amo13g0655 531 SMART WD40_4 408 460 IPR001680 GO:0005515
Amo13g0655 531 SMART WD40_4 229 268 IPR001680 GO:0005515
Amo13g0655 531 SMART WD40_4 319 358 IPR001680 GO:0005515
Amo13g0655 531 SMART WD40_4 365 402 IPR001680 GO:0005515
Amo13g0655 531 SMART WD40_4 119 156 IPR001680 GO:0005515
Amo13g0655 531 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Amo13g0655 531 PRINTS G protein beta WD-40 repeat signature 255 269 IPR020472 -
Amo13g0655 531 PRINTS G protein beta WD-40 repeat signature 447 461 IPR020472 -
Amo13g0655 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 402 IPR001680 GO:0005515
Amo13g0655 531 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 17 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0655 Amo-Chr13 8082841 8084649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0655 175 470 Acyl Lipid Metabolism Gene Families AT3G18860 25.552 1.66e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0655 - - adu:107476730 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0655 13 8082841 8084649 Amo13g0655 13 8082841 8084649 ECH