Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0624 ATGAGTGAGATGGGTAATCTGAGCAAGCAGCTTCTTAAGCTCTTTCTTTTCCTCTTTGCAACTCTTCAGTTCCCTTCTTCTTCCTTCGCTGAGGTCTTCTTCGAAGAGAGGTTCGAAGATGGATGGAAGAGTCGTTGGGTTTTATCAGATTGGAAAAGGAGTGAAGGAAAAGCTGGTACCTTTAAGCACACTGCAGGAAAATGGCCTGGAGATCCTGATGACAAAGGTCTCCAAACATATAATGATGCCAAGCATTATGCCATATCTGCGAAGATACCAGAGTTGAGCAACAAGAACAAGACACTGGTGGTCCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGCGGTGGTTACATCAAGCTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGGGATACTCCATACAGTCTGATGTTTGGACCAGATATATGCGGCACACAGACCAAAAAGCTGCATCTTATACTATCATACCAGGGGCAGAACTACCCCATTAGAAAGGATTTACAATGCGAAACAGACAAAATGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTGTCCTTGTTGATAATCGAGAAAGAGACTCTGGAAGCATGTATACAGATTGGGACATCCTTCCTCCAAGGAAGATCAAGGATGTCAATGCCAAAAAGCCGGCAGACTGGGATGATAGAGAGTACATTGAAGATCCTAATGAAGTCAAACCAGAGGGGTATGATTCAATCCCAGCTGAAATTCCTGATCCTAAAGCCAAGAAGCCTGCTGACTGGGATGAGGATGAAGATGGACTATGGAAGCCCTCCAAAGTGCCCAATCCAGCATACAAAGGGCCATGGAAACGCAAGAAAATCAAGAACCCCAATTACAAGGGAAAGTGGAAGATCCCATGGATTGACAACCCAGAATTCGAGGACGATCCTGATCTCTATGTGTTGAAACCAATAAAATATGTGGGCATCGAAGTGTGGCAGGTGAAGGCTGGTTCAATTTTCGACAATATTTTACTTTGTGATGACCCACAGTATGCAAAGCAAATTGTGGATGAATATATGGCTAATAATAAAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAGGAAAGAAAGGCTAGGGAAGAAGAGGAGGCGCAAAGAGCAAGAGAAGAGGGCGAGAAGAGGAGGAGGGAGAGGGATCATAAATATGGAGATAGGCGGCGCCGTAGAAGGCCGGATCCCCATGAGTACATGGATTATCATGTAAGCCTAAAACTCTCTTTTCTCTTTCCTTATTGA 1299 0.4349 MSEMGNLSKQLLKLFLFLFATLQFPSSSFAEVFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWPGDPDDKGLQTYNDAKHYAISAKIPELSNKNKTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIRKDLQCETDKMTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVNAKKPADWDDREYIEDPNEVKPEGYDSIPAEIPDPKAKKPADWDEDEDGLWKPSKVPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIFDNILLCDDPQYAKQIVDEYMANNKEAEKEAFEEAEKERKAREEEEAQRAREEGEKRRRERDHKYGDRRRRRRPDPHEYMDYHVSLKLSFLFPY* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0624 432 PIRSF Calreticulin 10 417 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 Coils Coil 355 400 - -
Amo13g0624 432 MobiDBLite consensus disorder prediction 365 400 - -
Amo13g0624 432 ProSitePatterns Calreticulin family signature 1. 109 124 IPR018124 GO:0005509
Amo13g0624 432 Gene3D - 31 387 - -
Amo13g0624 432 MobiDBLite consensus disorder prediction 230 244 - -
Amo13g0624 432 PANTHER CALRETICULIN AND CALNEXIN 9 409 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 Gene3D Calreticulin/calnexin, P domain 205 325 IPR009033 GO:0005509|GO:0005515
Amo13g0624 432 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 229 IPR013320 -
Amo13g0624 432 Pfam Calreticulin family 271 344 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 Pfam Calreticulin family 35 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 ProSitePatterns Calreticulin family signature 2. 141 149 IPR018124 GO:0005509
Amo13g0624 432 MobiDBLite consensus disorder prediction 254 274 - -
Amo13g0624 432 PRINTS Calreticulin signature 111 129 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 PRINTS Calreticulin signature 137 153 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 PRINTS Calreticulin signature 226 239 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 PRINTS Calreticulin signature 254 276 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 PRINTS Calreticulin signature 292 311 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 PRINTS Calreticulin signature 325 345 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Amo13g0624 432 PANTHER CALRETICULIN-3 9 409 - -
Amo13g0624 432 MobiDBLite consensus disorder prediction 230 277 - -
Amo13g0624 432 SUPERFAMILY P-domain of calnexin/calreticulin 212 327 IPR009033 GO:0005509|GO:0005515
Amo13g0624 432 MobiDBLite consensus disorder prediction 365 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0624 Amo-Chr13 7736898 7742955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0624 9 352 Miscellaneous Gene Families AT5G61790 34.586 1.40e-66 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0624 K08057 - gmx:100802428 707.212