Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0578 ATGTTGATAATGGAATCGAAGAAGGTGCATGCACTAATTGGCGTGATTGTTAGCATTTGTGTTATTGAGATAATAATTAAGCTACGTGATTTTCATTATTTGCAGTATGAAGGTGCAGCCAGGGAAGGTGGTAGAGGACCCTCTATATGGGATACTTTCACCCATAAATACCCAGGAAAAATTAAAGATGGAAGTAATGGAGATGTGGCTGATGATTCCTATCATCAGTATAAGGAAGATATTGAACTCATGAAGTATATGAATTTGGATGCTTATAGATTCTCCATTTCTTGGTCAAGAATACTCCCAAAAGGAAAGCTTAGTGGAGGTGTAAACCACAAAGGAATTGAATACTACAACAACCTCATCAACGAGCTATTGGCTAATGGTCTGCAACCATTTGTGACTATTTTTCATTGGGACGTTCCTCAGGCCTTGGAAGACGAGTATGGTGGTTTTCTAAGCCCGCACATTGCAGATGATTTTAAGGACTATGCTGAAGTTTGTTTCAAGGAATTTGGTGACAGAGTGAAACACTGGATCACTTTGAACGAACCCAAGAGTGTGAGCAAGAATGGCTATGCAAACGGTAGGTATGCACCAGGGCGGTGTTCTGATTGGCTAAAACTGAATTGCACGGGAGGTGATTCGGGGACTGAGCCATATTTGGCTGCACACCACCAACTTCTTGCTCATGCTGCTGCTGCCAAGCTGTACAAGACTAAGTATCAGGCATCTCAAAAGGGTTTAATAGGGATTACCTTAGATTCTGACTGGTTTGTGCCAGTTTCTAAAGCAAAATCAGATCGTGATGCTGCAAGACGAGCCCTGGACTTTATGTTTGGATGGTTTATGGAGCCACTCACTAAAGGTGAGTATCCAAAAAGCATGCAATCTATGGTAGGAGATCGGCTGCCAAAGTTCTCTGAAGAAGAATCCCAGCAACTTAGGGGATCGTTCGATTTTCTGGGCCTAAATTATTACTCATCCTTGTATGCCGCCTATGCGCCTCACCTGCGCAGTGCCAAACCAGCTCTACAAACTGATGCTCTTGTTAATACTTCAAATCAACACAATGGCAATCCCCTTGGTCCAGTGGCTGCTTCAGACTGGTTATGCATTTATCCAAGAGGATTTCGTGAACTATTGCTCTTCATCAAGAAGCAGTACAGCAACCCTGTGATTTACATTACTGAAAATGGCTATGATGAGTTCAATGATCCAACGCTATCACTTGAAGAAGCACTTATAGATACTTATAGGATTGATTACTTCTATCGTCATCTTTATTATCTTCATACTGCAATTCGGGATGGTGTGAATGTAAAGGGATATTTTGCATGGTCATTGTTGGATAACATGGAATGGGACTCTGGCTACACTGTGAGATTTGGACTCATCTTTGTGGATTTTAAACATGGCTTGAAAAGATACCCAAAACTCTCGGCTCGTTGGTTCAAGAATTTCCTCAAAAAACATTAG 1482 0.4157 MLIMESKKVHALIGVIVSICVIEIIIKLRDFHYLQYEGAAREGGRGPSIWDTFTHKYPGKIKDGSNGDVADDSYHQYKEDIELMKYMNLDAYRFSISWSRILPKGKLSGGVNHKGIEYYNNLINELLANGLQPFVTIFHWDVPQALEDEYGGFLSPHIADDFKDYAEVCFKEFGDRVKHWITLNEPKSVSKNGYANGRYAPGRCSDWLKLNCTGGDSGTEPYLAAHHQLLAHAAAAKLYKTKYQASQKGLIGITLDSDWFVPVSKAKSDRDAARRALDFMFGWFMEPLTKGEYPKSMQSMVGDRLPKFSEEESQQLRGSFDFLGLNYYSSLYAAYAPHLRSAKPALQTDALVNTSNQHNGNPLGPVAASDWLCIYPRGFRELLLFIKKQYSNPVIYITENGYDEFNDPTLSLEEALIDTYRIDYFYRHLYYLHTAIRDGVNVKGYFAWSLLDNMEWDSGYTVRFGLIFVDFKHGLKRYPKLSARWFKNFLKKH* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0578 493 Gene3D Glycosidases 32 492 - -
Amo13g0578 493 SUPERFAMILY (Trans)glycosidases 33 491 IPR017853 -
Amo13g0578 493 PANTHER GLYCOSYL HYDROLASE 36 492 IPR001360 GO:0004553|GO:0005975
Amo13g0578 493 Pfam Glycosyl hydrolase family 1 35 492 IPR001360 GO:0004553|GO:0005975
Amo13g0578 493 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 36 492 - -
Amo13g0578 493 PRINTS Glycosyl hydrolase family 1 signature 319 333 IPR001360 GO:0004553|GO:0005975
Amo13g0578 493 PRINTS Glycosyl hydrolase family 1 signature 463 475 IPR001360 GO:0004553|GO:0005975
Amo13g0578 493 PRINTS Glycosyl hydrolase family 1 signature 395 403 IPR001360 GO:0004553|GO:0005975
Amo13g0578 493 PRINTS Glycosyl hydrolase family 1 signature 439 456 IPR001360 GO:0004553|GO:0005975
Amo13g0578 493 PRINTS Glycosyl hydrolase family 1 signature 418 429 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0578 Amo-Chr13 7333321 7337059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0578 35 492 Glycoside Hydrolase AT5G44640 56.427 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0578 - K01188 gmx:100801874 821.231