Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0574 ATGATAAAGCCTCATCTTTTGCATCAATCATACCAAAAAACCAACCATACCTTCTTCTCTCTTCATAGGCCATACTTCCATGGCGGCCGCGGCGACATTGGCGCCAACAAAATTAGAACTTTATCAACTCTTCCACTACTATGGCCGGCTCATGCGAAGAAGAGGGAAAGACTTAAGCGCCTTGTCCTTCCCCCTCCTCGCGCGCAAGCTAGCCCTAGTTCTTCAGCTACCACAAAAGACATAGATCATGTTATTGATGACACCAATGAGAATAAGGACATTGGTGTTGTGAATGTTAAAGCGGTGGTTAAGGTGAAGTTAACAAAGGCTGGGTTTTTTTCAAGTCTTAGTTTGGACCGTGGAATTGATGATTTAACTGATTTGCTTGGTAAATCTATCTTGTTGGAACTTGTTAGCTCCCACCTTCATGATTCTGAGGGTGGAAAGGAGAAGGAGACAATTAAAGCATACGCACACAAAGCAGGGGGAGATGAGAAGTCGGTTAAGTATGAAAGCGATTTTGAAGTAGCAAATGATTTTGGAGAGATTGGTGCAGTTCTTGTTGAGAATGAGCATCACACTGAGATGTTCCTTGAAACCATTACCCTCCATGGCCTCCCGGAGGGTCCTGTTCATTTTGATTGTGCTTCATGGGTTCATTCTAAGTTCGATAATCCCACCAAAAGAATATTCTTCACCAATAAGTGTTACTTACCATCGGAAACCCCGAGTGGTTTAAGAAGATTAAGAGCAGAAGAATTGAGTAACCTGAGAGGGAATGGAGAAGGAACACGAAAAAGCTTTGAAAGAATTTACGATTACGACATTTACAATGACATTGGTGATCCAGACAGAAGCCTTGATCTTCAGAGGCCTCCGTTAGGCGGCAAAGAACGACCTTATCCCCGCCGTTGCCGAACCGGCCGTCCACACTCCCAAGCAGATCGTTGGTCAGAGAATAGGAATAATGGAAAAAAATTCTACGTTCCAAGGGATGAGTGCTTCTCGGAGGTGAAGGAGCTAACGTTCTCAACAAAGGCACTGCACGCGGTGCTTCTGATACTGGTTCCGTCGCTGGGGAAAATCATCAAAGACAAGGATCTTGAGTTCCCGTTCTTCCATGAGATTGATTCACTCTTCAGCGTCGGACTTGATTTGCCTTCTGAAGCTGATGATGCAACTGAGGAAGGATTTCTTGGAGCCATGATGCCTAGGCTTGTCAAATACATTTCCGGTGGTGATCGCCAAAATGTTCTTCGCTTCGAGACCCCTGAGACAATGAACAGGGATAGATTTTTCTGGTTTAGAGATGAGGAATTTGCTAGACAGACTGTTGCTGGCCTCAACCCACTTAGCATAAGTTTGGTCAAGGAATGGCCTTTGAGGAGCAACCTTGACCCAGGTAAATACGGTCCACAAGAATCAGCAATTACTTCTGAAATTATCAATAAAGAGATAGGAGGAATACTTACCGTAGAAAAGGCTATTGAAGAAAAGAAGTTGTTCATTTTGGACTACCATGATATATTATTACCATATGTTAGCAAAGTAAGGAAACTGAAGGGGAAAACACTGTATGGGTCAAGAACTTTGTTCTTTCTAACTCCAGAAGGGACACTGAGACCTCTTGCCATTGAACTTACAAGACCTCCCATGGATGGAAAAAAGCAATGGAAGCAAGTCTTCACTCCTTCTTGGCATTCAACAAGTGTTTGGCTATGGAGGATTGCTAAGGCCCATGTTCTTGCACATGACTCTGGCTATCACCAACTTATTAATCATTGGTTAAGAACTCACTGTGTGACAGAGCCATATGTTATTGCAACAAATAGACAACTTAGTATAATGCATCCTATATATAAATTGCTACACCCTCATTTTCGTTACACATTAGAGATTAATGCATTGGCACGAGAAGCACTTATTAATGCTGATGGAACAATTGAGAGCTCATTCGCACCGGGAAAGTATGCCATGGAGATTAGCTCTGCTGTCTATCATCATGATTGGCGATTTGACATGGAATCTCTACCTGCAGACTTAATCAGAAGGGGAATTGCCATAAAAGATCCATTTGAACCACATGGGTTAAGACTAACAATCAAAGATTACCCTTTTGCCAATGATGGACTCCTTTTATGGGACATTATCAAGCTATGGGTGACGGATTATGTGAACCATTATTACCCTAATTCAAGTGTTGTGGAGCATGATGAGGAGCTTCAAGCATGGTGGAAAGAGATAATAACAGTTGGACATGGTGACAAAAAGGATGAACCATGGTGGCCAATTCTCAACACTCCCAAGGACTTAATTGGAATTCTAAGCACAATAATTTGGGTAACTTCTGGTCACCATGCAGCTGTAAACTTTGGTCAATACACATATGGTGGTTACTTCCCAAATAGGCCAACAATTGCAAGGACCAAAATGCCCTCGGAAGACCCTTCAGAAGAAGAGTGGAAGGAGTTCCTTAAGAAGCCTGAAAGAGCACTTCTTAAGTGTTTTCCTTCTCAGCTTCAAGCAACTAGAGTCATGGCCGTCTTGGATATTCTCTCCACTCATTCGCCCGACGAGGAGTACATCGGCGAGAAGATGGAACCTTCTTGGGGTGAAGACCCTGTTATAAGAGATGCATTTGAAATGTTTAAAGCCAGATTGAAGAAACTTGAAGTACTCATTGATGAGAGGAATGAGAATACAAAGTTGAAGAACAGAAATGGTGCTGGTATTGTTCCTTATGAACTTTTGAAGCCTTTTTCAAAGCCAGGAGTCACTGGAAAGGGGGTTCCTTGCAGTATTTCCATTTGA 2811 0.4269 MIKPHLLHQSYQKTNHTFFSLHRPYFHGGRGDIGANKIRTLSTLPLLWPAHAKKRERLKRLVLPPPRAQASPSSSATTKDIDHVIDDTNENKDIGVVNVKAVVKVKLTKAGFFSSLSLDRGIDDLTDLLGKSILLELVSSHLHDSEGGKEKETIKAYAHKAGGDEKSVKYESDFEVANDFGEIGAVLVENEHHTEMFLETITLHGLPEGPVHFDCASWVHSKFDNPTKRIFFTNKCYLPSETPSGLRRLRAEELSNLRGNGEGTRKSFERIYDYDIYNDIGDPDRSLDLQRPPLGGKERPYPRRCRTGRPHSQADRWSENRNNGKKFYVPRDECFSEVKELTFSTKALHAVLLILVPSLGKIIKDKDLEFPFFHEIDSLFSVGLDLPSEADDATEEGFLGAMMPRLVKYISGGDRQNVLRFETPETMNRDRFFWFRDEEFARQTVAGLNPLSISLVKEWPLRSNLDPGKYGPQESAITSEIINKEIGGILTVEKAIEEKKLFILDYHDILLPYVSKVRKLKGKTLYGSRTLFFLTPEGTLRPLAIELTRPPMDGKKQWKQVFTPSWHSTSVWLWRIAKAHVLAHDSGYHQLINHWLRTHCVTEPYVIATNRQLSIMHPIYKLLHPHFRYTLEINALAREALINADGTIESSFAPGKYAMEISSAVYHHDWRFDMESLPADLIRRGIAIKDPFEPHGLRLTIKDYPFANDGLLLWDIIKLWVTDYVNHYYPNSSVVEHDEELQAWWKEIITVGHGDKKDEPWWPILNTPKDLIGILSTIIWVTSGHHAAVNFGQYTYGGYFPNRPTIARTKMPSEDPSEEEWKEFLKKPERALLKCFPSQLQATRVMAVLDILSTHSPDEEYIGEKMEPSWGEDPVIRDAFEMFKARLKKLEVLIDERNENTKLKNRNGAGIVPYELLKPFSKPGVTGKGVPCSISI* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0574 936 PANTHER LIPOXYGENASE 45 935 IPR000907 GO:0016702|GO:0046872
Amo13g0574 936 ProSitePatterns Lipoxygenases iron-binding region signature 2. 616 626 IPR020834 GO:0016702|GO:0046872
Amo13g0574 936 PANTHER LIPOXYGENASE 45 935 - -
Amo13g0574 936 SMART LH2_4 99 234 IPR001024 GO:0005515
Amo13g0574 936 MobiDBLite consensus disorder prediction 287 319 - -
Amo13g0574 936 Pfam PLAT/LH2 domain 148 232 IPR001024 GO:0005515
Amo13g0574 936 Gene3D PLAT/LH2 domain 83 237 - -
Amo13g0574 936 ProSiteProfiles PLAT domain profile. 112 233 IPR001024 GO:0005515
Amo13g0574 936 ProSitePatterns Lipoxygenases iron-binding region signature 1. 589 603 IPR020833 GO:0016702|GO:0046872
Amo13g0574 936 MobiDBLite consensus disorder prediction 297 319 - -
Amo13g0574 936 CDD PLAT_LH2 120 234 IPR042057 -
Amo13g0574 936 Pfam Lipoxygenase 245 919 IPR013819 GO:0016702|GO:0046872
Amo13g0574 936 Gene3D - 339 431 IPR027433 -
Amo13g0574 936 SUPERFAMILY Lipoxigenase 238 936 IPR036226 -
Amo13g0574 936 Gene3D - 568 935 - -
Amo13g0574 936 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 236 936 IPR013819 GO:0016702|GO:0046872
Amo13g0574 936 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 98 237 IPR036392 GO:0005515
Amo13g0574 936 PRINTS Plant lipoxygenase signature 300 319 IPR001246 GO:0016491
Amo13g0574 936 PRINTS Plant lipoxygenase signature 203 221 IPR001246 GO:0016491
Amo13g0574 936 PRINTS Plant lipoxygenase signature 849 863 IPR001246 GO:0016491
Amo13g0574 936 PRINTS Plant lipoxygenase signature 458 477 IPR001246 GO:0016491
Amo13g0574 936 PRINTS Plant lipoxygenase signature 526 550 IPR001246 GO:0016491
Amo13g0574 936 PRINTS Plant lipoxygenase signature 367 388 IPR001246 GO:0016491
Amo13g0574 936 PRINTS Plant lipoxygenase signature 229 250 IPR001246 GO:0016491
Amo13g0574 936 PRINTS Plant lipoxygenase signature 268 284 IPR001246 GO:0016491
Amo13g0574 936 Gene3D - 238 338 - -
Amo13g0574 936 Gene3D - 433 566 - -
Amo13g0574 936 PRINTS Lipoxygenase signature 571 588 IPR013819 GO:0016702|GO:0046872
Amo13g0574 936 PRINTS Lipoxygenase signature 589 606 IPR013819 GO:0016702|GO:0046872
Amo13g0574 936 PRINTS Lipoxygenase signature 609 629 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0574 Amo-Chr13 7284761 7295796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0574 179 936 Acyl Lipid Metabolism Gene Families AT3G45140 59.396 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0574 K00454 - gmx:100797626 1451.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0574 13 7284761 7295796 Amo13g0574 13 7284761 7295796 ECH