Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0563 ATGCCTGTAACAGCAGCAGCCACCTTACTATTTCTCGCCGCGGTAATTTCCGCCGCGAACTCGTGCCCGCCCTCCGACCGGGAAGCACTATTAGCCTTCAAGGCTGCTCTCCGGGAGCCGTACAACGGCGGAATCTTCAACTCATGGACCGGCACTAACTGCTGCCGGAACTGGCTCGGCGTAGCATGCGACCAGAACTCCGGCAGAGTAGCCGAGATCAACCTCCGTGCCACCACGCTCTACACAACGTTCGAGAAGCCTCATCGACAGGGATACATGGCCGGTCACATCTCCCCGGAGATCTGCAAACTCACTAGCCTCTCCAGCATCGTCATCACCGACTGGCAAGGAATCTCCGGCGACCTGACGCATCTTAGCGCCGCCGACAACTCCATCACCGGCGTAATACCGGCATCGATTTCGTCGTTGACCGGATTAACGTACCTTGACCTCCGTAACAACAGAATCTCTGGCCCGATCCCGAACAGTTTGGGCCAACTAAGGTTTCTGAGCCGGGCCTTCCTTAGCGGGAACCAGATTACTGGGCCAATTCCGGCCTCAATTTCTCGAATGTATCGTCTCGTGGATCTGGATCTTTCTCGAAACAGGCTATCTGGGCCCATACCTGAGTCATTGGGCCGAATGCCAGTTCTAGCAACACTAAATTTGAATACAAACAACCTTTCGGGAAAGATTCCATCGGGCCTGTTGGGCTCAGGTATCAGTGATTTGGACTTGAGCCATAACATGCTGGAGGGTTATATACCCGATTCGTTTGGGCCAAAGTCTTATTTTACTTGTTTGGAATTAGGTTACAATAATTTTAGGGGTTCGATCCCTAAATCCATTGCTAAAGCTGCGTTTATTGGGTTTCTTGATTTGAGCTATAATCACTTGTGTGGCCCAATTCCAAAGGGTGTTACACTCTCATTAGTGACGTCACTAGTAGCTCTAATTACACAATTACAATTAGTACAATGTTGCCCTTCATCAGAATGGGCATCCCTAATGGCCATCAAGGCCTCCCTCTACGAACCAAACTTCGGAATCTTCCACACGTGGCGCGGCACCAACTGCTGCTACAAATGGTACGGCATTGCATGCGACCCGACCACCCGCCGTGTAGCCCAAATCAACCTCAACGGCCTAACCGTCCCCGACAATCGCCGTCGCCTCAACCGTCACGCCACCACCGGCTACATGACCGGCCACATTTCCCCTTCCATATGCAACCTCACACAACTCTCATCCATCACAATCTCTGATTGGAAGGGCATTTCGGGAATTATCCCTTCTTGTATTCAAACTCTTTCCTTACTTCAAATATTAGACCTCTCCAATAACAGCATTACCGGACAGGTCCCTAAAAGCATAGGAAGCCTCACACAACTTACAATGCTCAATCTCGCAGATAATCGCATCTCGGGAACCATTCCAACCACTCTAACTAACCTCAGGAACCTCGTACACCTCGATCTCCGTAACAACCTCATGAGAGGTCACATTCCAACGGACTTCGGCCGGCTCAACAACATGAACCGGGCTTTCTTGAGCCATAACCTTTTAACCGGTCCGATCCCCGAAACAATTTCCAGGATTTATGGTCTGGCCGTTCTGGACCTCTCAATGAACCGGTTTTCCGGTAAGGTTCACGAGTCACTGGGCCGGATGCCGGTTCTTGACTCGCTAAAACTGAAGTATAACAGATTAACGGGTGAGATTCCTTCCACGGTTTTGGGTTCGAGGATGACTCATTTGGATCTGAGAGGGAACATGCTGAGTGGGGAAATTGCTGACGTGTTCGGAGAGCGTTCGTATTTCATAAACCTGGATCTGTCTTTTAACAACTTGAGTGGTTCGGTTCCAAAGTCGTTGAGTTCTGCTAATTACATTGGTCACTTGGATTTGAGTCATAACCGTTTGTGTGGGAGGATTCCTAGTGGTGAACCGTTTGATCGTCTGAGAACGACGTCGTTTGAGCATAATAAGTGCCTATGTGGCATGCCTCTTAAGCCGTGCACTCAAGAAACAGTTTGA 2037 0.4998 MPVTAAATLLFLAAVISAANSCPPSDREALLAFKAALREPYNGGIFNSWTGTNCCRNWLGVACDQNSGRVAEINLRATTLYTTFEKPHRQGYMAGHISPEICKLTSLSSIVITDWQGISGDLTHLSAADNSITGVIPASISSLTGLTYLDLRNNRISGPIPNSLGQLRFLSRAFLSGNQITGPIPASISRMYRLVDLDLSRNRLSGPIPESLGRMPVLATLNLNTNNLSGKIPSGLLGSGISDLDLSHNMLEGYIPDSFGPKSYFTCLELGYNNFRGSIPKSIAKAAFIGFLDLSYNHLCGPIPKGVTLSLVTSLVALITQLQLVQCCPSSEWASLMAIKASLYEPNFGIFHTWRGTNCCYKWYGIACDPTTRRVAQINLNGLTVPDNRRRLNRHATTGYMTGHISPSICNLTQLSSITISDWKGISGIIPSCIQTLSLLQILDLSNNSITGQVPKSIGSLTQLTMLNLADNRISGTIPTTLTNLRNLVHLDLRNNLMRGHIPTDFGRLNNMNRAFLSHNLLTGPIPETISRIYGLAVLDLSMNRFSGKVHESLGRMPVLDSLKLKYNRLTGEIPSTVLGSRMTHLDLRGNMLSGEIADVFGERSYFINLDLSFNNLSGSVPKSLSSANYIGHLDLSHNRLCGRIPSGEPFDRLRTTSFEHNKCLCGMPLKPCTQETV* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0563 678 Pfam Leucine rich repeat 122 180 IPR001611 GO:0005515
Amo13g0563 678 Pfam Leucine rich repeat 414 474 IPR001611 GO:0005515
Amo13g0563 678 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 122 307 - -
Amo13g0563 678 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 2 122 - -
Amo13g0563 678 SMART LRR_typ_2 143 167 IPR003591 -
Amo13g0563 678 SMART LRR_typ_2 461 484 IPR003591 -
Amo13g0563 678 SMART LRR_typ_2 557 581 IPR003591 -
Amo13g0563 678 SMART LRR_typ_2 215 239 IPR003591 -
Amo13g0563 678 SMART LRR_typ_2 437 460 IPR003591 -
Amo13g0563 678 SMART LRR_typ_2 485 509 IPR003591 -
Amo13g0563 678 Gene3D Ribonuclease Inhibitor 21 317 IPR032675 -
Amo13g0563 678 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 315 674 - -
Amo13g0563 678 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 122 307 - -
Amo13g0563 678 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 122 - -
Amo13g0563 678 Pfam Leucine rich repeat N-terminal domain 331 369 IPR013210 -
Amo13g0563 678 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Amo13g0563 678 SUPERFAMILY L domain-like 21 306 - -
Amo13g0563 678 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 315 674 - -
Amo13g0563 678 SUPERFAMILY L domain-like 327 673 - -
Amo13g0563 678 PRINTS Leucine-rich repeat signature 437 450 - -
Amo13g0563 678 PRINTS Leucine-rich repeat signature 194 207 - -
Amo13g0563 678 Gene3D Ribonuclease Inhibitor 397 677 IPR032675 -
Amo13g0563 678 Gene3D Ribonuclease Inhibitor 325 396 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0563 Amo-Chr13 7134046 7137471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0563 89 674 Receptor kinase-like Gene Family AT5G46330 32.198 5.93e-73 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0563 - - lja:Lj3g3v3246320.1 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0563 13 7134046 7137471 Amo13g0563 13 7134046 7137471 ECH