Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0538 ATGGCGTCTCGTCGTTGCTTCACAATGTTGAGACGGGCTCGTTTGGCTTCAGTATTCCTTCGACACTTCACCACAACTCCCAACACCATCACCCACCACTCTTCTTCATTGTTGTTGCCACCATTACTGAGAGTCTTTGACTCTGCCAAAACGGCGTCGTGTTTCCGGCACTACCACGACGGAAGGCCCAGAGGCCCACTTTGGAGAGGAAAGAAGCTCATTGGCAAAGAGGCGCTCTTTGTCATTCAAGGTTTGAAGCGCTTCAAGGATGACCACGACAAACTTCACAAGTTCATCAAAAACCATGTCTTGAGGCTCTTGAAGCTCGACTTGATCGCTGTTCTCACTGAGCTTGAGCGCCAGGAAGAAGTTTCTCTCGCCCTCACGGTTTTTAAGGTGACGCAAAAGCAAGATTGGTACATTCCGGATAAATACTTGTATAAGGACTTGATTATTGCACTGGCAAGGGCTAAAAAGATGGACGAAGTAATGGAAATGTGGGAAAGCATGAAAAAGGAGAATCTCTACCCTGATTCTCAGACCTATACTGAGGTTATAAGAGGCTTCTTGAAGTATGGATCTCCTGCAGATGCGATGAATGTGTATGAGGACATGAAGAATTCTCCAGATCCACCAGAGGAGCTACCATTCAGGATTCTGTTGAAAGGGCTCTTGCCTCATCCACTTCTGAGAAACAAAGTGAAACAAGATTTTGAGGAAATTTTTCCTGATTCAAGTATATATGATCCACCACAAGAGATATTTGGTGTACGCTGA 777 0.4543 MASRRCFTMLRRARLASVFLRHFTTTPNTITHHSSSLLLPPLLRVFDSAKTASCFRHYHDGRPRGPLWRGKKLIGKEALFVIQGLKRFKDDHDKLHKFIKNHVLRLLKLDLIAVLTELERQEEVSLALTVFKVTQKQDWYIPDKYLYKDLIIALARAKKMDEVMEMWESMKKENLYPDSQTYTEVIRGFLKYGSPADAMNVYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGVR* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0538 258 Pfam PPR repeat family 147 190 IPR002885 -
Amo13g0538 258 TIGRFAM PPR: pentatricopeptide repeat domain 181 207 IPR002885 -
Amo13g0538 258 TIGRFAM PPR: pentatricopeptide repeat domain 147 179 IPR002885 -
Amo13g0538 258 Gene3D Tetratricopeptide repeat domain 72 258 IPR011990 GO:0005515
Amo13g0538 258 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Amo13g0538 258 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Amo13g0538 258 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 7 257 - -
Amo13g0538 258 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 7 257 IPR044795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0538 Amo-Chr13 6841355 6846256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0538 80 224 Glycosyltransferase AT1G05670 26.974 7.40e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0538 - - gmx:100306428 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0538 13 6841355 6846256 Amo13g0538 13 6841355 6846256 ECH