Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0536 ATGGCTGAAGCATCAAACATTGGTAGCCAAAGCAGTAGATGGTCCCTTCAAGGGTTGACAGCCCTCGTTACTGGTGGATCCAAAGGAATCGGGTATGCAATTGTGGAAGAGTTAGCAGGGCTAGGGGCCAGGGTACACACTTGTTCTAGGAACGAAGCTCAACTTAATGAGTCCTTACATGAATGGAGTGCAAAGGGATACCATGTCACAGGTTCTGTATGTGACATGGCGTCTCGTCCGCAGAGAGAAGACCTCATTGCTAAAGTCTCTGGTTTGTTTAACGGCAAACTTGACATCCTTGTGAACAATGTTGGAACCAATTTTCAAAAGGAGACCACTGAGGTCACAGAGGAAGACTTCAGATTCCTTGTGAGCACGAATCTTGAATCTGCTTTCCACATAAGCCAGCTTGCTTATCCACTCCTCAAATCATCACAGGCTGCAAGCATAGTCTTCATATCCTCCATTGCAGGCGTGGTCTCACTAGACATGAAAGGAACCATATACAGTGCAGCAAAAGGAGCAATCAACCAACTGACAAGGAATTTGGCATGTGAATGGGCAAAACATAACATAAGGACTAATTGCATTGCACCGGGGCCAATCAAAACCAGTCTGGCTGAAAGGGTATTAAACTTAGACGGAGAGGCGAAACTGGTGGATGCTTTTGTTTCGCGAACTCCTCTTGGACGGATGGGAGAGGCAGGGGAGGTGTCTTCCATTGTAGCATTTCTTTGCATGCCTGCGGCTTCTTACATAACTGGACAGACCATTTGTGTCGATGGCGGCTTAACTGTCAACGGTGTCTAA 810 0.4679 MAEASNIGSQSSRWSLQGLTALVTGGSKGIGYAIVEELAGLGARVHTCSRNEAQLNESLHEWSAKGYHVTGSVCDMASRPQREDLIAKVSGLFNGKLDILVNNVGTNFQKETTEVTEEDFRFLVSTNLESAFHISQLAYPLLKSSQAASIVFISSIAGVVSLDMKGTIYSAAKGAINQLTRNLACEWAKHNIRTNCIAPGPIKTSLAERVLNLDGEAKLVDAFVSRTPLGRMGEAGEVSSIVAFLCMPAASYITGQTICVDGGLTVNGV* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0536 269 Pfam Enoyl-(Acyl carrier protein) reductase 27 265 - -
Amo13g0536 269 Gene3D - 3 269 - -
Amo13g0536 269 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 269 - -
Amo13g0536 269 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Amo13g0536 269 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Amo13g0536 269 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Amo13g0536 269 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Amo13g0536 269 PRINTS Glucose/ribitol dehydrogenase family signature 228 248 IPR002347 -
Amo13g0536 269 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Amo13g0536 269 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Amo13g0536 269 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 266 IPR036291 -
Amo13g0536 269 PANTHER TROPINONE REDUCTASE 2 269 IPR045000 GO:0016491
Amo13g0536 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Amo13g0536 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Amo13g0536 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0536 Amo-Chr13 6828089 6829083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0536 13 268 Miscellaneous Gene Families AT2G29290 64.844 4.00e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0536 K08081 - gmx:100780806 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0536 13 6828089 6829083 Amo13g0536 13 6828089 6829083 ECH