Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0487 ATGGCACTAACAACTCTCATCAGCTTCAAGCTTTCCCTGCTGAACCCCCTTCACCATCATCATCAACGGATAAAGAGCTCAAAACTTCAACTCTCCAATGTTGGCATCAGTCATCAGCACCGCATGGTTACTTCCATGAACCATCATTTGGTCCCCAAGTACCCGTTTCTTCTTCCCTCTTGCAATGGTCATAATCCTAAGCTCAGATTCCACTCTTGTGGGCAGGTTGGAGCACAGAAGGGGTATGCTTCTTCTGGGGAGGAACCTCAGTCGCGTGTTTCTGACACAAGTACATACCAAGAGGAATTCTCTTGGTCTTCTGTGGTTTTTCCGTTTCTATTCCCAGCATTGGGTGGCTTGTTATTCGGTTATGATATTGGTGCCACCTCAGGGGCCACAATCTCACTGCAGTCACCTGAGCTTAGTGGCATAACTTGGTTCAATCTTTCGGCTATTCAGCTTGGACTTGTGGTCAGTGGTTCCCTCTATGGGGCTCTTCTTGGCTCACTTATTGCATATGCCGTTGCTGATTTCCTTGGGAGGAAGAGACAACTCATTGTTGCAGCACTGTTATATGTGCTTGGCGGTTCGATCACTGCGTATGCACCAGAGCTCAATGTCCTCTTAGCAGGAAGGCTGCTTTATGGACTTGGTATAGGTTTGGCCATGCACGGTGCTCCTTTGTATATTGCGGAAACATGTCCATCACAAATCCGTGGGACTCTAGTATCATTAAAAGAACTCTTCATTGTCTTGGGGATTCTGCTTGGTTATTTTGTGGGAAGCTTTGAGATTAATGCCGTTGGGGGATGGCGGTTTATGTATGGCTTTAGTGCTCCGATTGCTGTACTAATGGGGCTAGGAATGTTGAGTCTCCCTCCCTCTCCGAGGTGGTTGCTTCTCAGGGCAGTTCAAGGGAAGGGTTCATTTCAAGATTTGAAGGAAAAGGCAATTCTCTCCCTGAGTAAATTAAGGGGCCGACCACCCGGCGACAAAGAATCTGAGAAGCAAATAGAAGAGAGCCTTGTTTCATTGAAGTCTGCATATGCAGATCAGGAATCAGAAGGGAGTTTCTTGGAGGTGTTTCAGGGTGCCAATCTGAAAGCTTTCATAATTGGTGGGGGGCTTGTCTTATTTCAACAGATAACTGGCCAACCAAGTGTTCTGTATTATGCAGGTCCAATTCTTCAGAGTGCCGGATTTTCTGCTGCAGCCGATGCTACCAAAGTTTCAGTTGTTATTGGCTTATTCAAGTTGCTAATGACATGGATTGCTGTCTTAAAAGTTGATGATTTGGGGAGAAGGCCTCTTCTGATTGGAGGTGTCACTGGCATTGCCCTTTCTTTAGCTCTTCTTTCTGCTTATTATAAATTTCTTGGAGGGTTCCCACTTATTGCTGTCGCGGCTTTACTTCTTTATGTTGGTAGCTATCAGGTATCATTTGGCCCAATAAGTTGGCTAATGGTATCAGAAATTTTCCCATTGCGCACGAGAGGACGGGGGATCAGTCTGGCTGTTCTAACAAACTTTGCTTCAAATGCAGTTGTGACCTTTGCATTCTCTCCTTTAAAGGAGTTTCTAGGAGCAGAAAACCTTTTTCTCCTTTTTGGGGCTATTGCTTTACTGTCACTTATCTTTGTTATATCTTCAGTTCCCGAAACAAAAGGCTTGAGCCTAGAAGATATTGAGTCCAAAATCTTGAAATGA 1707 0.4511 MALTTLISFKLSLLNPLHHHHQRIKSSKLQLSNVGISHQHRMVTSMNHHLVPKYPFLLPSCNGHNPKLRFHSCGQVGAQKGYASSGEEPQSRVSDTSTYQEEFSWSSVVFPFLFPALGGLLFGYDIGATSGATISLQSPELSGITWFNLSAIQLGLVVSGSLYGALLGSLIAYAVADFLGRKRQLIVAALLYVLGGSITAYAPELNVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFEINAVGGWRFMYGFSAPIAVLMGLGMLSLPPSPRWLLLRAVQGKGSFQDLKEKAILSLSKLRGRPPGDKESEKQIEESLVSLKSAYADQESEGSFLEVFQGANLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVTGIALSLALLSAYYKFLGGFPLIAVAALLLYVGSYQVSFGPISWLMVSEIFPLRTRGRGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIALLSLIFVISSVPETKGLSLEDIESKILK* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0487 568 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 3, CHLOROPLASTIC 87 568 - -
Amo13g0487 568 CDD MFS_GLUT10_12_Class3_like 114 562 - -
Amo13g0487 568 Gene3D MFS general substrate transporter like domains 102 566 IPR036259 -
Amo13g0487 568 ProSitePatterns Sugar transport proteins signature 2. 214 239 IPR005829 GO:0016021|GO:0022857|GO:0055085
Amo13g0487 568 ProSiteProfiles Major facilitator superfamily (MFS) profile. 111 555 IPR020846 GO:0022857
Amo13g0487 568 TIGRFAM SP: MFS transporter, sugar porter (SP) family 96 562 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo13g0487 568 Pfam Sugar (and other) transporter 114 563 IPR005828 GO:0016021|GO:0022857|GO:0055085
Amo13g0487 568 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 87 568 - -
Amo13g0487 568 SUPERFAMILY MFS general substrate transporter 112 563 IPR036259 -
Amo13g0487 568 PRINTS Sugar transporter signature 490 502 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo13g0487 568 PRINTS Sugar transporter signature 380 390 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo13g0487 568 PRINTS Sugar transporter signature 209 228 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo13g0487 568 PRINTS Sugar transporter signature 467 488 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo13g0487 568 PRINTS Sugar transporter signature 119 129 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0487 Amo-Chr13 6288117 6291708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0487 60 568 Organic Solute Cotransporters AT5G59250 77.626 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0487 - - aip:107629076 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0487 13 6288117 6291708 Amo13g0487 13 6288117 6291708 ECH