Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0484 ATGCACGCTTTCCATAAAACCACACTACTCCCCAGGATTCCCATAACAAACGCCATCATCCGCCGCTCCTTCCGATCAGATCCCTTATTCTATGCCCAACTCATCCAAACCTACGCTCGTGATCGAGCGTTGCACCACGGCAAGAAGCTCCACGCCCACCTAATCACCAACGGCATCGCTTGCTTCAGCCTTGTCGCTTCCAACTTAGTTTCCTTCTATGCTTGCTGCGGCCAACTCTCCCATGCGCGAAAACTGTTCGATAAAATTCCGAAAACAAATGTGCGCCGGTGGATTTCCTTCATCGGAACCTGCGCTCGCTGCAGCTTCCACCACGAGGCCATTGCCGTGTTCTCAGAGATGCTGGCAACCCAAACGCCCAATCCCAATGCGGTTTTCGTCATTCCAAGTGTTCTCAAAGCTTGCGGCCATGTCGGGGACCAAATCACGGGTCAGAAGATACATGGGTTGATTCTGAAGTGTTGTTTTGAGGTTGACCCTTTTGTGTCTAGCTCGTTGATTGTAATGTACTCGAAGTGCTTGAGAGTTGGGGACGCGCGCAAGGTGTTTGACGGAATGGAGGTTAAGGATTTGGTGGCTTTGAACGCACTTGTTGCTGGGTACTCCCAAGTGGGGCTTGCGGGTGATGCTTGGAGTTTGGTGGAGAGGATGAGATTGATGGGTGTGAATCCAAATCTAGTGACTTGGAATAGTTTACTATCTGGGTTTTCGCAAAAATGTGACCTTGCTATGGTTTCTGAAATTTTCAGGTTGATGACTAAGGATGGTGTGGTCCCTGATGTGGTGTCTTGGACTTCTGTTATATCTGGGTTTGTGCAGAATTTTCGTAATGAAGAAGCTTTCGACACTTTCAAGCAAATGTTGCGTCATGGGTTCTGCCCAACTTCGGCTACTATCAGCACTCTTCTCCCTGCATGTGCCACTGTCGAAAGAATGAGGATTGGGAAGGAGATTCATGGCTACGCTCTGGCAATTGGGATAGAGGAAGATATATATGTGAGGAGTGCTCTTGTTGACATGTATGCAAAATGTGGCTTCATCTCTGAAGCTAGAACACTTTTTGGTATTATGCCAGAGAAGAACACAGTTACTTGGAACTCTATCATTTTTGGGTATGCCAATCACGGGTATTGTGATGAAGCCATTGAGCTCTTCAATCAAATGGAGATGGAAGGGAAAGCCAAGCTGGATCATTTAACTTTCACTGCGATTCTCACAGCATGCGTCCATGCCGGTGACATTGAACTTGGGCAGAGTCTGTTCAAGACTATGCAAGAGAAGTATGGAATTGAGCCACGTCTGGAGCATTATGCATGTATGGTGGATCTTCTTGGTAGAGCCGGGAAGGTTGACGAAGCGTACTGCATGATCAAGGCAATGCCAATTGAGCCTGATCTGTTTGTGTGGGGTGCATTGCTGGCTGCTTGCAGAAATCATGGGCATGTGGAGCTTGCAGAAGTGGCAGCTAAGCATCTGCTGGAGGTGGAGCCTGAGAGTGTTGGGAATCGTCTTCTATTGACGGGTGTGTATGCTGATGTAGGCAAGTGGGCAAAAGTTGAGAGGATCAAGAAGAGGATGAAGAAGGGGAAACAGAGAAAATTCCAAGGGTTGAGTTGGATAGAAAGAACAGGATGCGTTGTTTCATGCTCCTCATCAGGCAACAGTTACAATATCTCTTGGGAGGCACCGTTGGACGACCCAGCGAAGCAAAGGATGCTTAAGGTTAAGAAGCCATTGAGTTTACTTAAGACGTAA 1773 0.4772 MHAFHKTTLLPRIPITNAIIRRSFRSDPLFYAQLIQTYARDRALHHGKKLHAHLITNGIACFSLVASNLVSFYACCGQLSHARKLFDKIPKTNVRRWISFIGTCARCSFHHEAIAVFSEMLATQTPNPNAVFVIPSVLKACGHVGDQITGQKIHGLILKCCFEVDPFVSSSLIVMYSKCLRVGDARKVFDGMEVKDLVALNALVAGYSQVGLAGDAWSLVERMRLMGVNPNLVTWNSLLSGFSQKCDLAMVSEIFRLMTKDGVVPDVVSWTSVISGFVQNFRNEEAFDTFKQMLRHGFCPTSATISTLLPACATVERMRIGKEIHGYALAIGIEEDIYVRSALVDMYAKCGFISEARTLFGIMPEKNTVTWNSIIFGYANHGYCDEAIELFNQMEMEGKAKLDHLTFTAILTACVHAGDIELGQSLFKTMQEKYGIEPRLEHYACMVDLLGRAGKVDEAYCMIKAMPIEPDLFVWGALLAACRNHGHVELAEVAAKHLLEVEPESVGNRLLLTGVYADVGKWAKVERIKKRMKKGKQRKFQGLSWIERTGCVVSCSSSGNSYNISWEAPLDDPAKQRMLKVKKPLSLLKT* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0484 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Amo13g0484 590 Pfam E motif 485 547 IPR046848 -
Amo13g0484 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Amo13g0484 590 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 128 - -
Amo13g0484 590 PANTHER OS03G0271300 PROTEIN 39 128 - -
Amo13g0484 590 PANTHER OS03G0271300 PROTEIN 93 548 - -
Amo13g0484 590 Pfam PPR repeat family 265 313 IPR002885 -
Amo13g0484 590 Pfam PPR repeat family 195 243 IPR002885 -
Amo13g0484 590 Pfam PPR repeat family 366 415 IPR002885 -
Amo13g0484 590 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 93 548 - -
Amo13g0484 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Amo13g0484 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Amo13g0484 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 438 IPR002885 -
Amo13g0484 590 Gene3D Tetratricopeptide repeat domain 321 397 IPR011990 GO:0005515
Amo13g0484 590 Pfam PPR repeat 443 466 IPR002885 -
Amo13g0484 590 Gene3D Tetratricopeptide repeat domain 398 572 IPR011990 GO:0005515
Amo13g0484 590 Gene3D Tetratricopeptide repeat domain 15 146 IPR011990 GO:0005515
Amo13g0484 590 Gene3D Tetratricopeptide repeat domain 226 320 IPR011990 GO:0005515
Amo13g0484 590 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Amo13g0484 590 TIGRFAM PPR: pentatricopeptide repeat domain 369 398 IPR002885 -
Amo13g0484 590 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Amo13g0484 590 TIGRFAM PPR: pentatricopeptide repeat domain 199 231 IPR002885 -
Amo13g0484 590 TIGRFAM PPR: pentatricopeptide repeat domain 233 267 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0484 Amo-Chr13 6266746 6268845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0484 293 575 Glycoside Hydrolase AT3G49170 23.024 1.18e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0484 - - aip:107629077 1143.64