Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0474 ATGATTTTTTCAAGGATTGGGCGCTCACTCTCGCGCTCTTCACGCGCCAAAGATTATTTGCGCGGCGATGCGAAATTGGGAACCCTTCTCGGAGCTACGCGAACGAATGTGCATTCGGAAGGAATGGAGTTGGGATTAGGGTTTTTTAGGGGCTATGTTGCTCATGCTAGAGCTCGTGGAAACGGAATCCTTTCCAGTTTGCCTGATTTTAAGTGTGTTGCGGCAAACCCAAAGATTCATTACCGGTTGTTTTCCAGCGAAGGACCTAAGAAGAAGAATTATGAGAACTTCTATCCCAAGGAGAAGAAGGAAATTCCAAAGGGGGAGGATAAAAAGCATGAGTCTAAAGAAGAGTCAGAGACAAACACAGATGATCATGGAAGTTTTCAAGAGACTTTCATGAAGCAAGTTCAAAATTTTATCACTCCTTTATTGGTGATGGGGCTATTTCTTGGATCATTTAATTTTGGTCCTCGTGAACAGCAACAGATTAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAGCCAGGATTAGTAGACCATATTGTTGTGTCAAATAAGTCGGTTGCCAAAATATACGTGAGGAATACTCCTCGTAACCAAACGGAGAGTGAAGTTATCCAAGGAACCCTCCCCGCAAAGGGAACTGGTGGGCAATATAAATATTATTTCAATATTGGAAGTGTGGAATCTTTTGAGGAGAAGTTAGAAGAAGCGCAAGAAGCACTAGGCATTGACCCCCATGATTATGTTCCTGTTACATATTCTTCTGAAATGGTTTGGTACCAGGAATTGATGAGGTTTGCTCCGACACTGTTGCTTTTGGGATCCCTCTTCTATATGGGAAGGAGAATGCAAGGTGGACTTGGTGTTGGCGGCGGTGGCGGTAATAAGGGTGCTCGTGGAATATTTAACATAGGGAAAGCCCATGTTACTAAAGTAGACAAGAATGCGAAAAATAAGGTTTTCTTTAAAGATGTTGCTGGTTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTTAAGAACCCAAAGAAATATGAAGAACTAGGGGCAAAAATCCCCAAGGGTGCTCTCCTGGTTGGTCCTCCTGGCACAGGAAAAACCCTTTTAGCAAAAGCAACAGCAGGGGAATCTGGTGTTCCATTTCTTTCGATATCTGGTTCAGATTTTATGGAGATGTTTGTTGGTGTTGGACCATCTAGGGTAAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCCCCTAGTATTATATTTATTGACGAGATTGATGCAATTGGTCGAGCAAGGGGACGTGGAGGTTTCTCTGGTGCAAATGATGAACGTGAAAGTACATTAAATCAGTTACTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTGGTTGTACTTGCTGGAACAAATAGACCTGATATCTTGGACAAAGCTCTACTTAGGCCAGGGAGATTTGACCGCCAGATAAGCATTGATAAGCCCGATATTAAGGGTCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCACGAGCCTTCATTTTATTCACAAAGGCTTGCAGCCCTTACACCAGGATTTGCGGGAGCAGACATTGCTAATGTTTGCAATGAAGCTGCGCTGATTGCTGCAAGGGGTGAGGAAACACAAGTGACAATGCAACATTTTGAAGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAGGGTGATAAGCAAGCTGGAAAGACGTACTGTAGCTTACCATGAATCAGGTCATGCCGTTGCAGGCTGGTTCTTGGAACATGCCGAACCTTTGTTGAAAGTTACTATAGTTCCTCGTGGCACAGCAGCTCTTGGGTTTGCACAGTATGTTCCAAATGAGAACCTTCTGATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGACACTAGGTGGTCGAGCTGCTGAGCAGATTCTCGTAGGAAGAATCTCAACTGGTGCGCAGAATGACTTGGAAAAAGTGACCAAGATGACATATGCCCAAGTAGCAATCTATGGTTTTAGCGACAAAGTTGGCCTCCTCTCTTTCCCTCCAAGAGAGGATTCGTTTGAGATGAGTAAACCATACAGCAGCAAGACAGCTGCGATCATTGATAACGAAGTCCGGGAATGGGTGACCAAAGCTTATGAACGGACGGTAGAGCTCATCGAAGAACACAAGGAGCATGTTGCTGAGATTGCAGAGTTGCTTCTTGAAAAGGAAGTACTTCACCAGGAAGACCTTGTTCGAGTTCTCGGAGAGAGGCCATTCAAGCCTGCTGAACTCACCAATTATGATAGGTTCAAGCAAGGTTTTCAAGAGGTAGAGGAGAAGGTTGTAGAGAGAAGCACAGTAGAGAACCCTGAGGATAGTGGTGGTTCTTCACCCTTAGAGCCCCAGGTTGTTCCCACATAG 2442 0.4414 MIFSRIGRSLSRSSRAKDYLRGDAKLGTLLGATRTNVHSEGMELGLGFFRGYVAHARARGNGILSSLPDFKCVAANPKIHYRLFSSEGPKKKNYENFYPKEKKEIPKGEDKKHESKEESETNTDDHGSFQETFMKQVQNFITPLLVMGLFLGSFNFGPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRNTPRNQTESEVIQGTLPAKGTGGQYKYYFNIGSVESFEEKLEEAQEALGIDPHDYVPVTYSSEMVWYQELMRFAPTLLLLGSLFYMGRRMQGGLGVGGGGGNKGARGIFNIGKAHVTKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFQIYLKKIKLDHEPSFYSQRLAALTPGFAGADIANVCNEAALIAARGEETQVTMQHFEAAIDRIIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQILVGRISTGAQNDLEKVTKMTYAQVAIYGFSDKVGLLSFPPREDSFEMSKPYSSKTAAIIDNEVREWVTKAYERTVELIEEHKEHVAEIAELLLEKEVLHQEDLVRVLGERPFKPAELTNYDRFKQGFQEVEEKVVERSTVENPEDSGGSSPLEPQVVPT* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0474 813 Pfam AAA+ lid domain 524 563 IPR041569 -
Amo13g0474 813 MobiDBLite consensus disorder prediction 95 125 - -
Amo13g0474 813 SMART AAA_5 357 497 IPR003593 -
Amo13g0474 813 SUPERFAMILY FtsH protease domain-like 578 768 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo13g0474 813 ProSitePatterns AAA-protein family signature. 465 483 IPR003960 GO:0005524|GO:0016887
Amo13g0474 813 Pfam ATPase family associated with various cellular activities (AAA) 362 494 IPR003959 GO:0005524|GO:0016887
Amo13g0474 813 Pfam Peptidase family M41 577 759 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo13g0474 813 Pfam FtsH Extracellular 142 248 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Amo13g0474 813 PANTHER ATP-DEPENDENT PROTEASE 35 812 - -
Amo13g0474 813 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 261 761 IPR005936 GO:0004176|GO:0004222|GO:0016020
Amo13g0474 813 CDD AAA 358 495 - -
Amo13g0474 813 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 35 812 - -
Amo13g0474 813 Gene3D - 305 494 IPR027417 -
Amo13g0474 813 Gene3D - 149 260 - -
Amo13g0474 813 Gene3D Peptidase M41 578 778 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo13g0474 813 Gene3D - 496 572 - -
Amo13g0474 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 568 IPR027417 -
Amo13g0474 813 MobiDBLite consensus disorder prediction 788 813 - -
Amo13g0474 813 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 12 800 IPR005936 GO:0004176|GO:0004222|GO:0016020
Amo13g0474 813 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0474 Amo-Chr13 6169567 6174534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0474 1 813 Miscellaneous Gene Families AT2G29080 76.005 0.0 1194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0474 K08956 - gmx:100806656 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0474 13 6169567 6174534 Amo13g0474 13 6169567 6174534 ECH