Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0363 ATGGATAGAAACAGAGCGAAAGGCATTACTTTCACGAAGGAACCGTACATCGAAGATGCAGGGCCACGCATTGTGAAGAGCATGAAGTTCAGTTCCTTATCTGACTCTGAGATTGGAAAACTCGCTGAAGTTCAAGTCTTCAAAGGCTCTTACTATGATCACTTCAAAAAACCCATCCCTGGTGGCTTGTTGGATCCTCGCATGGGTCCTGCTAATAAGGAGCTTATTTGCGCGACATGCGGTGGTGACTTTGCTCATTGTCCGGGCCACTTCGGATACTTAAATCTTGCCCTTCCCATCTTCAATATTGGATTCTTGGGTACCATTGTGGAAATATTGAAGTCCATTTGCAAGTGCTGTGCTCGAATTCTTCTCAATGAAGATATACGTAAAGATCGCTTGAAAAAAATGAGAAGACCCAGAATTGATGCACTGGCGAAGGCTGAATTAGCGAAAAAGGTTGTAGAGGCATGCAGCAAAGTATCAATGTGCTCGAGATGTGGATATAAGAATGGTTCGGTAAAGAAGCTTGTGGGTTCGCTAAAAATCACTCATGATCGCTCAAAATGTAATGATAGTAGCATTGAAGAATTTCAAACAGCACTTTCACATGCAAGAGAATCTAGATTGACCAGCGCTGTGGATACTCATATTCTAAACCCATTCCAAGCTTTATCCCTGTTTAAAAGGATGCTGGATGAGGACTGTGAATTACTTTATCTTGCTGAAAGACCAGAGAAACTCATCGTTACAAACATTGCAGTGCCCCCATTGGCTATGCGACCTTCAGTTATAATGGATGGATCACAGAGCAATGAAAATGATGTAACAGAGAGGCTAAAGCAAATAGTCCAAGCTAATGCTCATGTGCGCCAAGAATTAGAAGAAATTGCTTCATTAAGATCTCTGGATGGTTGGGAAACGCTTCAATTTGAGGCTGCTCAATTCATAAATAGTGAGGTTCGTGGTATACCATACCACCAGCAACGGGAAAAGACAATGGCGGGTTTAGTTCAACGCCTTAAAGGGAAGCAGGGACGTTTTCGTGGCAACTTATCTGGGAAACGTGTTGAATTTACTGGCAGGACAGTTATTTCACCGGATCCTAATTTAAAGATTACTGAGGTTGCAATACCCATGCTTATGGCTCGTATATTGAGTTATCCTGAGCGTGTTTCACATCACAACATTGAAAAGCTGAGACAGTGTATAAGAAATGGTCCTGATAAGTATCCTGGTGCAAGACAATATAGAGATGCCTCGGGTTCCACATGGACCTTAAGAGTTCCTCACAGGAAGCGCTTTGCAGACCAGCTGAAATTTGGTGATATAGTTGATCGTCATTTGGAAGATGGCGACATCATTCTTTTTAATAGGCAGCCAAGCTTGCATCGGATGTCTATAATGTGTCATAGGGCGAGGATTATGCCTTGGAGAACTTTGAGATTCAATGAATCTGTTTGTAACCCATATAATGCTGATTTTGACGGTGATGAGATGAACTTACATGTGCCACAGACTGAGGAAGCACGGACAGAGGCTATTTTGTTGATGGGGGTGCAAAATAATCTGTGCACACCAAAAAATGGTGAAATTTTGGTTGCCTCTACTCAAGACTTCTTAACCTCTTCCTATCTCATAACTAGAAAAGATACATTTTATGATCGTTCAACCTTTTCACTTATTTGCTCATACATGGGGGATGGCATGGATCTTGTTGATCTGCCAACTCCCGCAATTATTAAGCCAGTTGAGCTTTGGAGTGGTAAACAGTTATTTAGCATTCTATTGCGCCCAAATGCAAATGTGAGGGTCTATGTGAATCTTACTGTTAAGGAGAAAATATACAGTACAAAGCTTGATGACAAGAAACGAGAAATGAAAACGATGTGCCCAAGTGATGGGTTTGTCTATTTTCGCAATAGTGAGTTGATATCAGGACAACTTGGAAAGGTGACTTTAGGGAATGGAAATAAGGATGGTCTTTTCTCTGTGCTACTAAGAGACTATAAACCACATGCTGCTGCTGCTTGCATGAATCGTGTAGCTAAATTGAGTGCTCGATGGATCGGAAATCATGGGTTCTCAATTGGCATTGATGATGTCCAACCAAAAGAGGTTTTGATAGAACAGAAAGATAAAACAATATCTGATAATTATAAAAAATGTGATGATTTTATAGCAGCTTTCAATAAAGGAAAGCTAGAACTCAAAGCCGGTTGTGATGCTGCTCAGACATTAGAAACTCTGATAACTGGTGTCTTGAATGGTATACGAGATACAGCAGGAAAGGTTTGTATGCAAACCCTACACTGGAGAAATAGCCCACTGATCATGTCGCAGTGTGGCTCCAAAGGATCTCCAATTAATATCAGTCAGATGGTTGCTTGTGTGGGTCAACAATCAGTTGGAGGTCGTCGTGCTCCTAATGGTTTCGTGGACCGTAGTCTTCCTCATTTCCCTAGAAAAGCAAAAACCCCAGCCGCTAAAGGTTTTGTTGCCGAATCTTTTTACAGTGGATTGTCTGCTACTGAGTTTTTCTTCCACACAATGGGAGGGCGTGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATACATGTCTCGTAGATTAATGAAATGTCTAGAGGATTTGTTCTTACAGTATGATTACACTGTAAGAAATGCTGCTGGTGGTATTGTTCAATTTTGTTATGGAGATGATGGCATGGATCCAGCTGGCATGGAAGGAAAAGATGGAAAACCACTAAATTTTGACCGGCTGTTTTTGAGAAGCCAGGCCATATGTCCAAGTGATGAAGACGATGACATCTTGTCTTCCTCAGATGTGCATGAAGTAGTTCAAAGGAAGCTTTCAGAAGTTGGTATGTGCAAGTTAGTCAAGCAAGAGGCTTCAGCGGATGATTCCTCTGCCGGCTTTGTAAATTCTCTTCAATCCTTTGTCAAAGGGAAAATAGAATCAACAGAACCTTCCACCAAAGAGGATTCTGAAAAGCTGAAAAAGTTTATTCAGAGGATTTCTGGGATTACTCGCAGACAACTAGAGGTTTTTCTTGATATTTGTTTATCTCGTTACCATTCAAAAAAAATTGAGGCTGGAACTCCCATCGGAGCAATTGGAGCTCATAGTATTGGAGAGCCTGGAACCCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTGACCCTTGGAGTTCCTCGCATCAAAGAAATTATAAATGGATCCAAAAAGATCAGCACACCAATCATCACTGCAATACTTGAGACAGATAATAATCCAAATACCGCAAGGATAGTAAAAGGTCGCATAGAAAAAACCAACTTAGGCCAGGTCGCAAAGAGTATAAAAGTTGTTATAACTTCAAGATCAGCATCAATTGTCATCTCGCTTGACATGGAAAGAATTCGAGATGCACATCTGCATGTAGATGCCAATATTGTAAAAGAGTCAATTTTGCATACTCCAAAACTAAAATTGAAGCAAGACAATGTTAAGATCTTAGATATCAAAAAGCTCAGGATTGTTCCCCCAGATGGTGATAGAAGTAAAATCCAATTTCAACTTAACCATCTTAAAAATTTGCTTCCTTCAGTTGTTGTGAAGGGAATTAAAACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGAGGCAAAAACTGAAAAGTTCAAATTACTGGTGGAAGGCACGGGTCTTCTAGATGTTATGGGAATTGAAGGGGTTGATGGACTTAATACTCTTAGTAATCATATAGATGAAGTGAGTGAGTCTCTGGGAATTGAAGCTGCTAGAAGGACTATCATTGAGGAGATAAAAGTAGTTATGGGAAGTCACGGTATGAGTATAGACATACGCCATATGATGCTTCTAGCAGATGTGATGACTGTTATGGGCAGAGTCCTTGGAATAACCAGATTCGGAATTCAAAAGATGGGCAAAAGTGTATTGATGCTTGCGTCTTTTGAGAGGACATCGGATCATCTTTTCAATGCAGCGGTACATGGGACAGAGGACCTGATTGAAGGAGTAAGTGAACGCGTAATCATGGGTATACCGATTCAGATAGGCACCGGAATGATCAAGGTCAAACAAAGGTTGAGCCCTCCAGAGTTGCTTCAAGGAACTCCTCCTATTCTATCTTATGTTTGA 4176 0.4092 MDRNRAKGITFTKEPYIEDAGPRIVKSMKFSSLSDSEIGKLAEVQVFKGSYYDHFKKPIPGGLLDPRMGPANKELICATCGGDFAHCPGHFGYLNLALPIFNIGFLGTIVEILKSICKCCARILLNEDIRKDRLKKMRRPRIDALAKAELAKKVVEACSKVSMCSRCGYKNGSVKKLVGSLKITHDRSKCNDSSIEEFQTALSHARESRLTSAVDTHILNPFQALSLFKRMLDEDCELLYLAERPEKLIVTNIAVPPLAMRPSVIMDGSQSNENDVTERLKQIVQANAHVRQELEEIASLRSLDGWETLQFEAAQFINSEVRGIPYHQQREKTMAGLVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPMLMARILSYPERVSHHNIEKLRQCIRNGPDKYPGARQYRDASGSTWTLRVPHRKRFADQLKFGDIVDRHLEDGDIILFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRSTFSLICSYMGDGMDLVDLPTPAIIKPVELWSGKQLFSILLRPNANVRVYVNLTVKEKIYSTKLDDKKREMKTMCPSDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKPHAAAACMNRVAKLSARWIGNHGFSIGIDDVQPKEVLIEQKDKTISDNYKKCDDFIAAFNKGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFVDRSLPHFPRKAKTPAAKGFVAESFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKCLEDLFLQYDYTVRNAAGGIVQFCYGDDGMDPAGMEGKDGKPLNFDRLFLRSQAICPSDEDDDILSSSDVHEVVQRKLSEVGMCKLVKQEASADDSSAGFVNSLQSFVKGKIESTEPSTKEDSEKLKKFIQRISGITRRQLEVFLDICLSRYHSKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGSKKISTPIITAILETDNNPNTARIVKGRIEKTNLGQVAKSIKVVITSRSASIVISLDMERIRDAHLHVDANIVKESILHTPKLKLKQDNVKILDIKKLRIVPPDGDRSKIQFQLNHLKNLLPSVVVKGIKTAERVVISKEEDKEAKTEKFKLLVEGTGLLDVMGIEGVDGLNTLSNHIDEVSESLGIEAARRTIIEEIKVVMGSHGMSIDIRHMMLLADVMTVMGRVLGITRFGIQKMGKSVLMLASFERTSDHLFNAAVHGTEDLIEGVSERVIMGIPIQIGTGMIKVKQRLSPPELLQGTPPILSYV* 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0363 1391 Pfam RNA polymerase Rpb1, domain 4 731 833 IPR007083 GO:0003677|GO:0003899|GO:0006351
Amo13g0363 1391 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1375 - -
Amo13g0363 1391 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1373 - -
Amo13g0363 1391 Pfam RNA polymerase Rpb1, domain 2 354 520 IPR000722 GO:0003677|GO:0003899|GO:0006351
Amo13g0363 1391 Gene3D - 702 819 IPR038120 -
Amo13g0363 1391 Pfam RNA polymerase Rpb1, domain 1 24 352 IPR007080 GO:0003677|GO:0003899|GO:0006351
Amo13g0363 1391 Pfam RNA polymerase Rpb1, domain 3 523 702 IPR007066 GO:0003677|GO:0003899|GO:0006351
Amo13g0363 1391 CDD RNAP_III_RPC1_N 33 890 IPR035697 -
Amo13g0363 1391 Gene3D RNA polymerase II, clamp domain 15 139 IPR044893 -
Amo13g0363 1391 Gene3D - 1321 1377 - -
Amo13g0363 1391 Gene3D RNA polymerase Rpb1, domain 3 528 701 IPR042102 -
Amo13g0363 1391 Pfam RNA polymerase Rpb1, domain 5 840 1323 IPR007081 GO:0003677|GO:0003899|GO:0006351
Amo13g0363 1391 CDD RNAP_III_Rpc1_C 1027 1369 IPR035698 -
Amo13g0363 1391 Gene3D - 820 878 - -
Amo13g0363 1391 Gene3D - 880 930 - -
Amo13g0363 1391 SMART rpolaneu7 246 548 IPR006592 GO:0003677|GO:0003899|GO:0006351
Amo13g0363 1391 Gene3D - 345 527 - -
Amo13g0363 1391 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1375 IPR045867 GO:0003899|GO:0006351
Amo13g0363 1391 Gene3D RNA polymerase ii 387 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0363 Amo-Chr13 4893856 4906813 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0363 K03018 - gmx:100811292 2142.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0363 13 4893856 4906813 Amo13g0363 13 4893856 4906813 ECH