LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g0346	ATGGCGGCGTCACGGATCATATCGCATCCTCACCGTCCATTCTCTCCTCCGCCATCTCAACCCCATGCGCACTCCTCCATCACCCTCAACTTCACACTCCACCCACCAAAACGGTGCCGTTTAGCGTGCGTTCTTCGCGCCTCGCTTAAGGAGAACGATCTCAACGATAAAGCTGACCTATTTGCTCTTCCCCGGCCTTTAACTTCCACTCAGCTCTCCGATTCAGTTTCCGATGGTCCACGTCTTCAAGTTGCATATCAGGGGGTTCCTGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTTCCATGTCCACAATTTGAGAATGCATTTCAAAAAGTTGAGAGGTGGCTTGTGGATAGAGCAGTTTTGCCAATTGAGAATTCTCTAGGAGGGAGCATCCACAGAAATTATGACCTTCTACTCAGGCACAGGTTGCATATAGTGGGAGAAGTGAAATATGCAGTTCATCATTGTCTGATGGCCAATCATGGTGTTAAACTCGAGGATCTGAAGCGTGTTCTTAGTCATCCACAGGCTCTTGCACAATGTGAGCACACACTGACGAAGTGGGGATTGGTTAGAGAAGCAGTCGATGATACAGCTGGTGCTGCGCAGTATATTGCCATGCATGGAGTAAAAGATGCAGGAGCGGTTGCTAGTTCTGCTGCTGCAAAGATTTATGGCTTGAATATACTTGCCCAAGACATTCAGGATGATTGTGATAATGTCACCCGATTTCTAATGTTAGCACGAGAACCTATAATTCCTGGTACAGATAGGCCATTTAAGACAAGCATAGTTTTTTCGTTGGAAGAGGGTCCGGGAATACTTTTCAAGGCTCTTGCGGTGTTCGCTCTGCGTCAAATCAACCTTTCAAAGATTGAAAGCCGTCCTTTGCGGAACATGCCGCTGCGAATGGCTGATGATAATAGCAATGGGTCACCCAAGTATTTTGATTATCTTTTTTATGTTGATTTTGAAGCGTCAATGGCTGATCCGAGGGCACAAAATGCTCTGAGGCATCTGAATGAGTTTGCTACGTTCTTGCGAGTTCTAGGGAGTTATCCGATGGATACTGGCACAGTGTAA	1110	0.4667	MAASRIISHPHRPFSPPPSQPHAHSSITLNFTLHPPKRCRLACVLRASLKENDLNDKADLFALPRPLTSTQLSDSVSDGPRLQVAYQGVPGAYSESAAQKAYPNCEAVPCPQFENAFQKVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKYAVHHCLMANHGVKLEDLKRVLSHPQALAQCEHTLTKWGLVREAVDDTAGAAQYIAMHGVKDAGAVASSAAAKIYGLNILAQDIQDDCDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGILFKALAVFALRQINLSKIESRPLRNMPLRMADDNSNGSPKYFDYLFYVDFEASMADPRAQNALRHLNEFATFLRVLGSYPMDTGTV*	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g0346	369	CDD	PBP2_Ct-PDT_like	84	260	-	-
	Amo13g0346	369	Pfam	Prephenate dehydratase	84	260	IPR001086	GO:0004664\|GO:0009094
	Amo13g0346	369	Gene3D	-	265	366	-	-
	Amo13g0346	369	Gene3D	-	79	166	-	-
	Amo13g0346	369	PANTHER	AROGENATE DEHYDRATASE	62	367	-	-
	Amo13g0346	369	SUPERFAMILY	Periplasmic binding protein-like II	83	264	-	-
	Amo13g0346	369	SUPERFAMILY	ACT-like	253	364	IPR045865	-
	Amo13g0346	369	ProSitePatterns	Prephenate dehydratase signature 1.	234	256	IPR018528	GO:0004664\|GO:0009094
	Amo13g0346	369	ProSiteProfiles	Prephenate dehydratase domain profile.	83	258	IPR001086	GO:0004664\|GO:0009094
	Amo13g0346	369	PANTHER	PREPHENATE DEHYDRATASE P PROTEIN	62	367	-	-
	Amo13g0346	369	ProSiteProfiles	ACT domain profile.	272	363	IPR002912	-
	Amo13g0346	369	MobiDBLite	consensus disorder prediction	1	26	-	-
	Amo13g0346	369	ProSitePatterns	Prephenate dehydratase signature 2.	298	305	IPR018528	GO:0004664\|GO:0009094
	Amo13g0346	369	CDD	ACT_CM-PDT	270	363	-	-
	Amo13g0346	369	Gene3D	-	167	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g0346	Amo-Chr13	4693797	4696979	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g0346	K05359		-	pvy:116139197	532.717

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo13g0346	13	4693797	4696979	Amo13g0346	13	4693797	4696979	ECH