Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0333 ATGCACAGGATCAAGAGAGCAACCTCCATTCTTTGTTCTTCAGTGTTCACAAGTTTGAAAACAACACATTCTCACCGTGCTGCTGCTTTCTCCACTTCCTTGCTTTTCGATGATACTCAGATTCAGTTCAAAGAAAGTGTTTCTCAATTTGCAACGGAACACATTGCACCTCATGCTTCAAAAATAGACCACACAAATTATTTCCCAAAGGAGGTTAACTTATGGAAAAGCATGGGAGAATTTAACCTTCATGGGATTACTGCACCAGAGGAATATGGAGGGCTTGGTCTCGGTTACTTGTATCACTGTATAGCAATGGAAGAGATAAGCCGTGCTTCAGGATCTGTTGGCCTTTCTTATGGTGCTCATTCAAACCTGTGTATCAATCAACTGGTAAGGAATGGAAACCCGGATCAGAAGCAGAAATACTTGCCAAAGCTTATCTCTGGAGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTTGATGGTGGCTACGTACTTAATGGAAACAAGATGTGGTGTACTAATGGTCCAGTCGCTCAAACATTGGTTGTCTATGCAAAGACAGACACAACAGCTGGGTCAAAAGGAATCACTGCATTCATCATCGAGAAGGGAATGCCGGGATTCAGCACGGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACATGTGAACTAGTGTTTGAGAATTGCTTCGTTCCTGAAGAAAATGTTCTTGGGGAAGTAGGAAAAGGAGTCTATGTCATGATGTCTGGGTTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCCCTGGGTATCATGCAGGCATGTCTTGATGTGGTCCTTCCTTATGTTCGACAAAGAGAGCAGTTCGGTCGTCCTATCGGGGAATTTCAGTTTATACAGGGGAAAGTTGCCGACATGTATACTTCTTTACAGTCCTCAAGGGCTTATGTGTATTCGGTGGCTCGGGACTGCGACAATGGAAAAGTAGACCCAAAGGATTGTGCTGGAGTTATACTTACTGCAGCTGAGAGAGCAACCCAAGTTGCTTTGCAGGCAATACAATGTTTGGGAGGAAATGGATATGTGAATGAGTATCCAACTGGTCGTCTTCTGAGAGATGCCAAACTATATGAGATTGGTGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAACTCTTCAAGGAGCAGTAG 1245 0.4426 MHRIKRATSILCSSVFTSLKTTHSHRAAAFSTSLLFDDTQIQFKESVSQFATEHIAPHASKIDHTNYFPKEVNLWKSMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGNPDQKQKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDTTAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGEVGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKVADMYTSLQSSRAYVYSVARDCDNGKVDPKDCAGVILTAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0333 414 PIRSF PIGM 23 141 - -
Amo13g0333 414 PIRSF PIGM 163 414 - -
Amo13g0333 414 Pfam Acyl-CoA dehydrogenase, N-terminal domain 38 151 IPR013786 GO:0016627|GO:0050660
Amo13g0333 414 Pfam Acyl-CoA dehydrogenase, middle domain 155 250 IPR006091 GO:0016627
Amo13g0333 414 Gene3D - 154 266 IPR046373 GO:0016627
Amo13g0333 414 Gene3D - 27 152 IPR037069 GO:0016627|GO:0050660
Amo13g0333 414 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 10 414 - -
Amo13g0333 414 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 260 412 IPR036250 GO:0016627
Amo13g0333 414 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 369 388 IPR006089 GO:0003995
Amo13g0333 414 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 30 273 IPR009100 GO:0016627
Amo13g0333 414 Pfam Acyl-CoA dehydrogenase, C-terminal domain 262 410 IPR009075 GO:0016627
Amo13g0333 414 Gene3D - 267 410 - -
Amo13g0333 414 CDD IVD 36 412 IPR034183 GO:0003995
Amo13g0333 414 PANTHER ACYL-COA DEHYDROGENASE 10 414 - -
Amo13g0333 414 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 157 169 IPR006089 GO:0003995
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0333 Amo-Chr13 4479155 4483314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0333 1 414 Acyl Lipid Metabolism Gene Families AT3G45300 84.058 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0333 K00253 - gmx:100794259 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0333 13 4479155 4483314 Amo13g0333 13 4479155 4483314 ECH