Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0325 ATGAGAGAAGCTACAAAGATTCTAGTGTTCCATTTGGTTTGGTTCCTCTGCATTCATGTCCCTCCTATGTTTTGTGCCAATGTAACATATGATCACAGAGCATTGCTCATTGATGGCAAGCGTAGAGTCTTCATTTCTGGTTCTATTCATTACCCTCGTAGCACTCCTCAGATGTGGCCAGACCTGATTCAGAAGTCGAAAGATGGAGGGCTTGATGTTATTGAGACTTATGTTTTTTGGAACTTTCATGAACCAGTTAGAGGGCAGTATTATTTTGAAGGAAGGGGTGATTTGGTAAATTTTGTAAAGTTAGTAGCAGCAGCAGGATTATATGTACATCTACGTATTGGACCTTATGCTTGTGCTGAATGGAACTATGGAGGTTTCCCTCTATGGCTGCATTTTATTCCAGGAATTAAATTCCGTACTGATAATGAACCTTTTAAGGCAGAAATGCAGAGATTCACTGCTAAGATTGTGGATATGATGAAGCAAGAAAATCTCTATGCTTCACAGGGAGGACCTATTATTTTATCTCAGATTGAGAATGAGTATGGAAACATTGATAAACCCTATGGTGCTGCTGGAAAATCCTACATAAAATGGGCAGCATCAATGGCTACATCCCTTAATACAGGGGTACCTTGGGTCATGTGCCAGCAACCAGATGCTCCTGATCCTATGATTAACACATGTAATGGATTTTACTGTGATCAATTCACACCAAATTCAAATGCAAAGCCAAAGATGTGGACTGAGAATTGGAGTGGATGGTTTCTTTCATTTGGAGGTGCTATGCCTTATAGACCTGTGGAAGATATTGCATTTGCTGTGGCACGTTTTTACCAAAGAGGTGGAACTTTTCAAAATTACTATATGTACCATGGAGGAACCAACTTTGGCAGGACTAGTGGTGGACCTTTCATTTCCACTAGTTATGATTATGATGCACCCATTGATGAGTATGGTATTATTAGACAACCAAAATGGGGCCACCTTAGAGATTTGCACAAGGCCATTAAGCTTTGTGAAGAAGCACTTATAGCTACTGATCCAACAATAACATCTCTTGGTTCAAATCTAGAGGCTGCAGTATACAAATCAGGAACTGTGTGTGCTGCTTTTCTTGCAAACATTGGCACATCAGATTCAACAACAAATTTCAATGGCAATTCATATCAGTTGCCAGCATGGTCTGTGAGCATCTTACCAGATTGCAAGAATGTTGTGCTTAACACTGCAAAGATTAATTCTGCATCTACAACTTCAAGCTTCATAACTCAATCTTTGAAACTAAAGGAGGATGGTGGTGGTGCTTTAGAAGATTCTAGCAGTGAATGGAGTTGGATAAGTGAACCAATTGGAATTTCAAAGAATGATTCATTCTCAAAATTTGGATTAGTAGAGCAAATAAATACCACTGCTGATAAGAGTGACTATTTGTGGTACTCATTAAGCATTGATTTTGAAGATGATGTTAGTGCTCAAACTGTTCTTCACATTGAATCTCTTGGACATGCCCTTCATGCTTTCATAAATGGGAAGCTTGCAGGGAGTGGAAAAGGAAACAGTGGCAATGCTAAAGTCAATGTGGATATCCCCATCACACTTGTAGCTGGGAAGAACACAATTGATCTCTTGAGTTTAACTGTGGGACTTCAAAACTATGGATCTTTCTTTGACACATGGGGTGCTGGAATCACTGGGCCAGTGACATTGAAGGGATTGAAGAATGGCACTACTATTGACCTCTCCTCCCAGCAATGGACATATCAGATTGGTCTTCAAGGTGAAGACTTAGGTCTATCTAGTGGAAGTGTTGGACAGTGGAACTCACAATCAAACTTACCTAAGAATCAACCCTTGACTTGGTACAAGACAAACTTTGTTGCTCCCTCTGGCAATGATCCGGTTGCAATCGACTTCACTGGGATGGGGAAAGGAGAAGCTTGGGTGAATGGACAGAGTATTGGAAGATTCTGGCCTACATATGTCTCTCCAAATTCTGGTTGTGCAACTTCATGCAATTATAGAGGATCTTATAGTTCATCCAAATGCCTCAAGAACTGTGGAAAGCCATCACAAACATTATACCATGTCCCAAGATCATGGTTGCAAACAGATAGCAACACTCTTGTGTTGTTTGAGGAAAGTGGAGGTGACCCTACACAAATCTCTTTTGCTACAAAGCAGATAGGAAGCTTGTGCTCACATGTATCTGAGTCTCACCCTCCACCAATAGACATGTGGAATTCAGATTCAGAATCAGGAAGAAGATCAGGGCCAGTTCTGTCACTAGAGTGTCCTAATCCTAAGCAGATCATCTCTTCAATTAAATTCGCCAGTTTCGGAACACCTAGTGGGAGTTGTGGAAGCTTCAACCATGGTAGCTGCAGCAGCAACAAGGCTCTATCCATTGTTAAGAAGGCCTGCATTGGATCAAGCAGCTGTAAAATTAATGTATCAATTGATACATTTGGAGATCCGTGTAGAAGAGTAACTAAAAGTCTTGCTGTTGAAGCTTCTTGTACATAG 2535 0.4071 MREATKILVFHLVWFLCIHVPPMFCANVTYDHRALLIDGKRRVFISGSIHYPRSTPQMWPDLIQKSKDGGLDVIETYVFWNFHEPVRGQYYFEGRGDLVNFVKLVAAAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIKFRTDNEPFKAEMQRFTAKIVDMMKQENLYASQGGPIILSQIENEYGNIDKPYGAAGKSYIKWAASMATSLNTGVPWVMCQQPDAPDPMINTCNGFYCDQFTPNSNAKPKMWTENWSGWFLSFGGAMPYRPVEDIAFAVARFYQRGGTFQNYYMYHGGTNFGRTSGGPFISTSYDYDAPIDEYGIIRQPKWGHLRDLHKAIKLCEEALIATDPTITSLGSNLEAAVYKSGTVCAAFLANIGTSDSTTNFNGNSYQLPAWSVSILPDCKNVVLNTAKINSASTTSSFITQSLKLKEDGGGALEDSSSEWSWISEPIGISKNDSFSKFGLVEQINTTADKSDYLWYSLSIDFEDDVSAQTVLHIESLGHALHAFINGKLAGSGKGNSGNAKVNVDIPITLVAGKNTIDLLSLTVGLQNYGSFFDTWGAGITGPVTLKGLKNGTTIDLSSQQWTYQIGLQGEDLGLSSGSVGQWNSQSNLPKNQPLTWYKTNFVAPSGNDPVAIDFTGMGKGEAWVNGQSIGRFWPTYVSPNSGCATSCNYRGSYSSSKCLKNCGKPSQTLYHVPRSWLQTDSNTLVLFEESGGDPTQISFATKQIGSLCSHVSESHPPPIDMWNSDSESGRRSGPVLSLECPNPKQIISSIKFASFGTPSGSCGSFNHGSCSSNKALSIVKKACIGSSSCKINVSIDTFGDPCRRVTKSLAVEASCT* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0325 844 Gene3D - 592 736 - -
Amo13g0325 844 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Amo13g0325 844 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Amo13g0325 844 Gene3D - 752 844 IPR043159 -
Amo13g0325 844 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Amo13g0325 844 Pfam Galactose binding lectin domain 766 843 IPR000922 GO:0030246
Amo13g0325 844 Gene3D - 428 574 - -
Amo13g0325 844 SUPERFAMILY Galactose-binding domain-like 588 754 IPR008979 -
Amo13g0325 844 SUPERFAMILY Galactose-binding domain-like 400 576 IPR008979 -
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 647 663 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 620 634 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 Pfam Beta-sandwich domain in beta galactosidase 347 416 IPR041392 -
Amo13g0325 844 ProSiteProfiles SUEL-type lectin domain profile. 758 844 IPR000922 GO:0030246
Amo13g0325 844 PANTHER BETA-GALACTOSIDASE RELATED 7 838 IPR001944 GO:0004553|GO:0005975
Amo13g0325 844 Gene3D Glycosidases 23 343 - -
Amo13g0325 844 PANTHER BETA-GALACTOSIDASE 7 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0325 Amo-Chr13 4388714 4396545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0325 25 697 Glycoside Hydrolase AT2G28470 76.765 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0325 - - gmx:100793198 1513.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0325 13 4388714 4396545 Amo13g0325 13 4388714 4396545 ECH