Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0289 ATGGCTTATTCCAACAAAATATTATTCCAATGCATTTCATTGGCTTTGGTTGTTCTTTTTGGAATCTTGTCTTTAGAGGCCAATGGTAGGATTCTTGAAGATTCCATAATGCATGAGAGACATGAAAAATGGATGGTTCAACATGGAAAATACTATAAAGACTCTAATGAAAAGGAATTAAGGTTCAAAATTTTCAAAGAAAATGTTGAACGCATTGAGGCCTTTAATAGTGATGGGAACAAGTCTTACAAGCTTGGTATTAATCAATTTGCTGATCTAACAAATGATGAGTTTAAGGGCAGGAATAAGTTCAAGGGTCACATGTGTTCCACAATCACAAAGACACCAACATTTAGGTATGAAAATGTGAGTGCTGTTCCACCTTCAATTGATTGGAGACAGAAAGGTGCTGTCACACCTATTAAGGACCAAGGCCAATGTGGATGTTGTTGGGCATTTTCTGCTGTGGCAGCAACAGAAGGAATCACAAAACTAACAACAGGGAAACTAATCTCCTTATCAGAACAAGAGCTTGTTGATTGTGACACAAAAGGTGTGGACCAAGGTTGTCAAGGTGGTCTAATGGACAATGCATTCAAATTCATAATCCAAAACAAAGGCCTCACAACAGAATCCAATTATCCATACACAGCATCTGATGGAACATGCAACACAAAAGCAGAATCAAACCATGCAGCCAGCATTAAAGGGTTTGAAGATGTACCTGCCAACAGTGAAAGTGCACTTCTAAAAAGTGTTGCCAATCAACCAGTTTCCGTTGCCATTGATGCTAGTGACTTTGGTTTCCAGTTTTACTCAGGTGGTGTTTTCACTGGATCTTGTGGTACTAGTTTGGATCATGGTGTCACTGCAGTTGGTTATGGAGTTAGTGATGATGGAACTAAGTATTGGTTGGTTAAGAATTCATGGGGTGAAACATGGGGTGAACAAGGTTACATTAGAATGCAGAGAGACATTGACGCTAAACAAGGTTTGTGTGGCATTGCAATGCAAGCTTCTTATCCTACTGCATAA 1035 0.3913 MAYSNKILFQCISLALVVLFGILSLEANGRILEDSIMHERHEKWMVQHGKYYKDSNEKELRFKIFKENVERIEAFNSDGNKSYKLGINQFADLTNDEFKGRNKFKGHMCSTITKTPTFRYENVSAVPPSIDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGITKLTTGKLISLSEQELVDCDTKGVDQGCQGGLMDNAFKFIIQNKGLTTESNYPYTASDGTCNTKAESNHAASIKGFEDVPANSESALLKSVANQPVSVAIDASDFGFQFYSGGVFTGSCGTSLDHGVTAVGYGVSDDGTKYWLVKNSWGETWGEQGYIRMQRDIDAKQGLCGIAMQASYPTA* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0289 344 SUPERFAMILY Cysteine proteinases 37 342 IPR038765 -
Amo13g0289 344 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Amo13g0289 344 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Amo13g0289 344 Pfam Cathepsin propeptide inhibitor domain (I29) 41 98 IPR013201 -
Amo13g0289 344 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 343 - -
Amo13g0289 344 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Amo13g0289 344 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Amo13g0289 344 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Amo13g0289 344 Gene3D Cysteine proteinases 24 344 - -
Amo13g0289 344 SMART Inhibitor_I29_2 41 98 IPR013201 -
Amo13g0289 344 Pfam Papain family cysteine protease 126 343 IPR000668 GO:0006508|GO:0008234
Amo13g0289 344 PANTHER - 25 343 - -
Amo13g0289 344 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Amo13g0289 344 CDD Peptidase_C1A 127 342 IPR039417 -
Amo13g0289 344 SMART pept_c1 126 343 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0289 Amo-Chr13 4018304 4020819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0289 - - gmx:100778111 555.829