LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g0114	ATGCTCAAATCAACATTCACTCCCATTTTCTGGGCACTTGTCCCAAAACCCATGTCTCCAAAACTATCACCCAACGTAATCATCAACACCTTCGCAAACAGCACTTCACTTGTTCGACAAAATGTCTCACTCAAACAACACCACTGCATCACCCCTTCATCAGCATACATTCACCTCCCCTTCTGCAGAAAACGTTGCCACTACTGTGACTTCCCCATTGTTGCTCTTGGTTCCGCCTCGGCCCAAATAGACGACGACCCGCGAGTCGTAAACTACATACAATGGCTCTGCAGAGAAATCAGTGCAACACAAGTGGAACTTGATGCCAAGGCACCCCTTGAAACAGTTTACTTTGGTGGTGGAACACCCTCCCTCGTGCCTCCAAGGTTGGTTTCTTTGGTTCTGGAGGCCTTAAAAATGAAGTTTGGGTTGAGTGAGGATGCAGAGATATCAATGGAAATGGATCCGGGGACTTTCGATGCTAAGACGATGAAGGAGGTGATGCTGTTGGGAGTGAACAGGGTGTCTTTGGGGGTTCAAGCATTTCAGGAGAAGCTATTGAAGTCTTGTGGGAGGGCTCATGGTGTGCAAGAGGTTCATGAGGCTATTGATATTGTAAAATTATGTGGGGTTGAGAATTGGAGCATTGATCTTATAGCTTCACTGCCTCATCAGACCAGTGATATGTGGAAGGAAAGTCTAAGGCTCACAATTGAGGCAGAACCAACTCATGTTTCTGTATATGATTTGCAAATTGAGCAGGGGACAAAATTTGGAAACTTGTACACACCGGGAGAATTCCCTTTGCCTTCCGAGACACAATCTGCTGATTTCTATAAGATGGCTTCAAGGATGCTTTGTGATGCCAATTATAACCATTATGAAATCAGCAGCTATGGTAAGAGTGGATATGAGTGCAAGCACAACTTCACCTATTGGAAGAACAAGCCTTTCTATGCCTTTGGCCTAGGCTCTGCTAGTTATATTGGTGGGTTGAGGTTTTCAAGACCAAAGAAGGTGAACGATTACATGAAGTTTGTGGAAAATTTGGAAAATGGATTAGTGAATAGCTCCGGTGATGGCCAGATTCATGCTAAGGACACGGCCACGGATATCGTGATGCTGTCCCTAAGAACTGCAAGAGGCTTAGACATGAAGTGCTTTGAAGAATCATTTGGGAGCTCTATCGTTTCATCACTGATTGAGGCCTATATACCTTATGTTGAGAGTGGACATGTAGTTTGTTTGGATGAAGAGAGAAGAACAATGGGGATAGATGAGCTCAACAATTCTTTACTGCATAAAACAAATACAGAAAGGAGGCTGGCTTATATAAGGCTAAGTGACCCAGAAGGTTTCCTCTTATCAAATGAGTTAATATCCCTTGCATTTGGGGTTATTGACAATTGCATGGATTGCCTTCAGCACTTGGAAGTTGTTTGA	1443	0.4394	MLKSTFTPIFWALVPKPMSPKLSPNVIINTFANSTSLVRQNVSLKQHHCITPSSAYIHLPFCRKRCHYCDFPIVALGSASAQIDDDPRVVNYIQWLCREISATQVELDAKAPLETVYFGGGTPSLVPPRLVSLVLEALKMKFGLSEDAEISMEMDPGTFDAKTMKEVMLLGVNRVSLGVQAFQEKLLKSCGRAHGVQEVHEAIDIVKLCGVENWSIDLIASLPHQTSDMWKESLRLTIEAEPTHVSVYDLQIEQGTKFGNLYTPGEFPLPSETQSADFYKMASRMLCDANYNHYEISSYGKSGYECKHNFTYWKNKPFYAFGLGSASYIGGLRFSRPKKVNDYMKFVENLENGLVNSSGDGQIHAKDTATDIVMLSLRTARGLDMKCFEESFGSSIVSSLIEAYIPYVESGHVVCLDEERRTMGIDELNNSLLHKTNTERRLAYIRLSDPEGFLLSNELISLAFGVIDNCMDCLQHLEVV*	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g0114	480	SUPERFAMILY	Radical SAM enzymes	52	414	-	-
	Amo13g0114	480	SFLD	anaerobic coproporphyrinogen-III oxidase like	52	414	-	-
	Amo13g0114	480	Pfam	Radical SAM superfamily	57	236	IPR007197	GO:0003824\|GO:0051536
	Amo13g0114	480	SMART	MiaB	52	281	IPR006638	GO:0003824\|GO:0051536
	Amo13g0114	480	SFLD	HemN-like, clustered with heat shock genes	52	414	IPR004559	GO:0004109\|GO:0005737\|GO:0006779\|GO:0051539
	Amo13g0114	480	PANTHER	RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL	3	466	-	-
	Amo13g0114	480	Gene3D	tm_1862 like domain	60	273	IPR023404	-
	Amo13g0114	480	PANTHER	COPROPORPHYRINIGEN III OXIDASE	3	466	IPR034505	-
	Amo13g0114	480	TIGRFAM	hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase	54	404	IPR004559	GO:0004109\|GO:0005737\|GO:0006779\|GO:0051539
	Amo13g0114	480	ProSiteProfiles	Radical SAM core domain profile.	47	290	IPR007197	GO:0003824\|GO:0051536

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g0114	Amo-Chr13	1654300	1655923	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g0114	-		K07739	gmx:100779022	734.947

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo13g0114	13	1654300	1655923	Amo13g0114	13	1654300	1655923	ECH