Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0106 ATGAAACGTTTCTTCCAGGTTATCAACAAAGACTCCGATGGTTCATGCAAGAAGCCCAAAGAGGAAGGAAATTACGATAATGCCACTGACACTGACACTCAGAAGAAAAAGGAGCCATTGAAGTTCGTTACTTGGAACGCCAACAGCTTCTACCTCCGCGTCAAGAACAACTTCCCTGAGCTATGCAAATTCGTCACTTCCTTTGATCCTGACGTAATTGCAATTCAGGAAGTGCGGATGCCTGCCGCTGGATCTAAGGGCACACCCAAAAATCAGGGAGAACTTAAGGATGATACAACCGCGTCCAGGGAAGAGAAGGCGGCATTGATGCGTGCACTTTCAGCTCCACCTTTTGGGAACTATCGTGTTTGGTGGTCTCTGGCAGATTCAAAGTATGCAGGGACAGCACTATTTGTGAAAAAATGCTTCAAACCAAAAAATGTCTTTTTCAATCTTGATAAAATAGCTTCAAAGCATGAACCAGATGGCAGAGTAATCTTGGTTGAATTCGAAACCCTTCGGTTGTTGAATACATATGTTCCAAATAATGGGTGGAAAGAGGAACCAAACTCATTTCAAAGGAGAAGAAAATGGGACAAAAGGATTCTAGAATTTGTTACACAAAATTCAGACAAGCCTTTGATATGGTGTGGGGATCTAAATGTGAGCCATGAAGAGATTGATGTGAGTCATCCAGAGTTTTTCAGTGCAGCGAAACAAAACGGCTATGTTCCTCCAAATAAAGAGGATTGGGGGCAGCCTGGCTTTACTTTATCTGAAAGAAGACGATTTGGTAACATCTTAAAAGAGGGACAGCTGGTAGATGCCTACAGATTTCTGCACAAGGACAAGGACATGGAACGAGGTTTCTCATGGTCCGGAAACCCAATAGGAAAGTATCGTGGAAAACGGATGCGAATAGACTATTTCCTAGTTTCAGAAAAACTCAAAGACAGGATCGTTGCATGCGAAATGCATGGACATGGAATAGAGTTACAAGGCTTTTATGGAAGTGATCACTGCCCTGTTACACTGGAGCTCTCTCCAAGTTCCAACTCTCAAAATGAGAATCCAGAATGA 1080 0.4287 MKRFFQVINKDSDGSCKKPKEEGNYDNATDTDTQKKKEPLKFVTWNANSFYLRVKNNFPELCKFVTSFDPDVIAIQEVRMPAAGSKGTPKNQGELKDDTTASREEKAALMRALSAPPFGNYRVWWSLADSKYAGTALFVKKCFKPKNVFFNLDKIASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVTQNSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKQNGYVPPNKEDWGQPGFTLSERRRFGNILKEGQLVDAYRFLHKDKDMERGFSWSGNPIGKYRGKRMRIDYFLVSEKLKDRIVACEMHGHGIELQGFYGSDHCPVTLELSPSSNSQNENPE* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0106 359 MobiDBLite consensus disorder prediction 12 33 - -
Amo13g0106 359 CDD Ape1-like_AP-endo 40 347 - -
Amo13g0106 359 Gene3D Endonuclease/exonuclease/phosphatase 6 349 IPR036691 -
Amo13g0106 359 SUPERFAMILY DNase I-like 40 347 IPR036691 -
Amo13g0106 359 PANTHER AP ENDONUCLEASE 30 351 IPR004808 GO:0004518|GO:0006281
Amo13g0106 359 TIGRFAM xth: exodeoxyribonuclease III (xth) 40 347 IPR004808 GO:0004518|GO:0006281
Amo13g0106 359 ProSiteProfiles AP endonucleases family 1 profile. 40 349 IPR004808 GO:0004518|GO:0006281
Amo13g0106 359 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 30 351 - -
Amo13g0106 359 Pfam Endonuclease/Exonuclease/phosphatase family 43 340 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0106 Amo-Chr13 1548524 1552973 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0106 - - gmx:100817167 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0106 13 1548524 1552973 Amo13g0106 13 1548524 1552973 ECH