Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0105 ATGGCAGCACTTACCACCATAATCTCTACCTCCTCCTCTTCTTCACTCTTAACAAAAACACAACATAGCCTCCTCAAACACAACAAAGACCACGATCATGTTCCTGTTCCTGTTCCATCATCATCTTTCATGGGCACCCCAACAACAATTTCCCTTAAGTCAACAAGACCAAGAACAGTGGGAATTGTTAGTGTTTCTTCTTTTAGAGTGAGCTGTTCAGCTGCTTCTTCTTCTTCCACTGTTGTTCCCTCTGCTCTTCTCTTTGACTGTGATGGAGTTCTTGTTGACACTGAGAAAGATGGCCACCGCATTTCTTTCAATGAAACCTTCCAAGAGAAAGAGTTAGGTGTGACCTGGGATGTGGACTTGTATGGAGAACTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCATACTTTAACAAGACAGGTTGGCCGGCGAATGCCCCGACAGGCGAAAAAGAAAGAAAAGATTTCATAGCTTCACTCCACAAGCGGAAGACGGAGCTATTCATGGCTCTCATTGAGAAAAAGCTGTTGCCTCTTCGTCCAGGTGTTGCAAAGCTTATTGATCAGGCTTTAAGCCAAGGAGTTAATGTAGCAGTGTGCAGCACTTCTAATGAGAAGGCGGTCTCTGCAATAGTATCATTCTTGCTAGGGCCTGAGAGGGCAGAAAAGATAAAGATATTTGCTGGAGATGTTGTTCCCCGGAAAAAGCCAGATCCGGCAATCTATCTCTTAGCCGCTAGCACTCTCGGCGTTGAACCTTCAAGATGTGTTGTGGTTGAGGACAGTGCCATAGGCCTAGCAGCTGCAAAAGGAGCAGGGATGAAGTGTATAATAACAAAGAGCGGCTATACAAAAGATGAAGATTTCTTAAATGCAGATGCTGTGTTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTAGCATTCTGTGGAAGCCTCCTTGAGAAGCAATATGTGAGCTAG 981 0.4455 MAALTTIISTSSSSSLLTKTQHSLLKHNKDHDHVPVPVPSSSFMGTPTTISLKSTRPRTVGIVSVSSFRVSCSAASSSSTVVPSALLFDCDGVLVDTEKDGHRISFNETFQEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPANAPTGEKERKDFIASLHKRKTELFMALIEKKLLPLRPGVAKLIDQALSQGVNVAVCSTSNEKAVSAIVSFLLGPERAEKIKIFAGDVVPRKKPDPAIYLLAASTLGVEPSRCVVVEDSAIGLAAAKGAGMKCIITKSGYTKDEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0105 326 SUPERFAMILY HAD-like 84 302 IPR036412 -
Amo13g0105 326 Gene3D - 85 301 IPR023214 -
Amo13g0105 326 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 167 282 IPR006439 -
Amo13g0105 326 PANTHER CBBY-LIKE PROTEIN 65 325 - -
Amo13g0105 326 Gene3D Putative phosphatase; domain 2 97 181 IPR023198 -
Amo13g0105 326 SFLD phosphoglycolate phosphatase 82 309 - -
Amo13g0105 326 Pfam Haloacid dehalogenase-like hydrolase 86 282 IPR041492 -
Amo13g0105 326 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 82 309 - -
Amo13g0105 326 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 65 325 IPR044999 GO:0016787
Amo13g0105 326 CDD HAD_CbbY-like 85 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0105 Amo-Chr13 1543135 1547038 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0105 - - gmx:100816266 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0105 13 1543135 1547038 Amo13g0105 13 1543135 1547038 ECH