Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0104 ATGAAAATGGCGGAACAAATCGAAGCAAAGGTCGCAGCAGCACCACCACCACCAACAACAACAACGGAAGCTGCAGAGATTCCTTCTAGCTCCAATTCCAAGGGTCTTAACCCTACCAAGCTCGTTGTTCTCGCTGACCTCAACGATCCTCCTGAAGCCGCCGACGACGACGACCCCCTCCCTCTCCCCCTCCACCATAATCTCCCTCCTCCTCCACCGCCACCACCGCTTCCGCCGCCTCCAATCACCAGGTTGGCAAATGATGAAAACAGCCAAGACAAGAGTTTGTTGTCCAAAGAAAATGATACAGTTGAAGGTGAAGGTAAAAAGTTGAACAAATTGGGGAAATCTCGCTCCAGACTTAGCAAGACAGATTCTTCTCTTGACTGTGGAGCTGATGCAGATGGTGATCAACATGTTCAGGGGGCTACTTCCTCTCGGGAGGAAAAAGTTAGCAGCATGAAAACTGGCTTGGTTCATGTTGCAAGAAAGATGCCCAAGAATGCTCATGCTCATTTTATTCTTGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGGCTATATTAGCTTATGAGAAGGCTGCCGAGATCTTACTCAAGCCTGAGGCTGAGATTGACAGGCCAGAGTTGCTTTCGTTAGTTCAGATTCATCACGCACAGTGCCTGATACTAGAAAGTTCATCAGAAAATAGTTCAGATAAAGAACTTGAACCTCATGAACTTGAAGAAGTTCTCTCTAAACTCAAAGAGTCAATGCAGTCAGATATCAGACAGGCAGCTTTATGGAATACACTAGGTTTTATTCTTCTTAGGAGTGGCCGTGTGCAGAGTGCTATCACAGTTTTGTCATCATTGTTGGCCATTGCACCGGAGAACTATGATTGCTTGGGGAACCTTGGGATAGCTTATCTTCAAAGTGGGAATTTGGAATTATCTGCAAAATGTTTCCAGGAGCTCATCCTGAAGGATCAAAACCACCCTGCAGCTTTAGTAAATTATTCTTCCCTACTTTTGTGTAAACATGCTTCAGTCGTAGCAGGTGCTGGTGCCAGTGCTGCTGAAGATGCTTTGGCAGATCGTGCTATGGCTATTCATGTTGCTAAGGAATGCTTGTTATCTGCAATTAAAGTGGATGGCAAATCAGCCCATATATGGGCAAATCTTGCAACTGCATTTTCTCTTAGTGGTGATCATCGAACATCCAGCAAGTGCTTGGAGAAGGCAGCAAAACTGGAACCCAATTGCATGTCTACTCGATATGCTGTTGCTATCCATCGAATAAAGGATGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCATGCGCTGGAAACGAGATGGCTTCTATAATAAGGGATGGTGATTCATCACTGGTTGAGCTTCCAATAGCATGGGCTGGGCTTGCCTTGGTTCACAAATCTCAGCATGAGATAGCAGCCTCATATGATAGTGAACATCATGAGTTGATGGAAGTTGAAGAGCGCACTGTTAGCAGTTTAAAGCAGGCTATAGCAGAAGATCCAGATGACCCTATGCAGTGGATTCAACTTGGCCTCCATAGTCTTTGCGCTCGGCAATTCAAAACATCACAGAAGTACCTCAAAGCTGCTGTTGCCTGTGACAAGGACTGCAGCTATGCTTGGTCTAACCTAGGTGTTTCCCTTCAACTATCAGATGAACCGTTACATGCCGAAGAAGTATATAAGAAAGCTTTGTCTTTAGCAACTACCGAACAAGCACATGCGATATTATCCAACTTGGGGATTCTCTACCGCTTTCAAAGACAATACCAACGAGCTAAGGCTATGTTTTCAAAGTCACTTGAACTTCAACCTGGATATGCCCCTGCATTCAACAACCTGGGTCTTGTGTTTGTAGCTGAGAGTCTTTTGGAAGAAGCCAAGTATTGTTTTGAAAAAGCCCTTCAATCAGACCCTTTGCTTGATGCAGCCAAGTCCAACTTGGTTAAGGTGATTTCCATGTCAAACTTGTGTAGAGACCTCTCTTCATGCCACGTTAAAGAATGA 2031 0.4481 MKMAEQIEAKVAAAPPPPTTTTEAAEIPSSSNSKGLNPTKLVVLADLNDPPEAADDDDPLPLPLHHNLPPPPPPPPLPPPPITRLANDENSQDKSLLSKENDTVEGEGKKLNKLGKSRSRLSKTDSSLDCGADADGDQHVQGATSSREEKVSSMKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAILAYEKAAEILLKPEAEIDRPELLSLVQIHHAQCLILESSSENSSDKELEPHELEEVLSKLKESMQSDIRQAALWNTLGFILLRSGRVQSAITVLSSLLAIAPENYDCLGNLGIAYLQSGNLELSAKCFQELILKDQNHPAALVNYSSLLLCKHASVVAGAGASAAEDALADRAMAIHVAKECLLSAIKVDGKSAHIWANLATAFSLSGDHRTSSKCLEKAAKLEPNCMSTRYAVAIHRIKDAERSQDPSELLSCAGNEMASIIRDGDSSLVELPIAWAGLALVHKSQHEIAASYDSEHHELMEVEERTVSSLKQAIAEDPDDPMQWIQLGLHSLCARQFKTSQKYLKAAVACDKDCSYAWSNLGVSLQLSDEPLHAEEVYKKALSLATTEQAHAILSNLGILYRFQRQYQRAKAMFSKSLELQPGYAPAFNNLGLVFVAESLLEEAKYCFEKALQSDPLLDAAKSNLVKVISMSNLCRDLSSCHVKE* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0104 676 Pfam Tetratricopeptide repeat 270 329 - -
Amo13g0104 676 Gene3D Tetratricopeptide repeat domain 583 664 IPR011990 GO:0005515
Amo13g0104 676 Gene3D Tetratricopeptide repeat domain 155 219 IPR011990 GO:0005515
Amo13g0104 676 MobiDBLite consensus disorder prediction 63 83 - -
Amo13g0104 676 SUPERFAMILY TPR-like 166 647 IPR011990 GO:0005515
Amo13g0104 676 ProSiteProfiles TPR repeat profile. 582 615 IPR019734 GO:0005515
Amo13g0104 676 Gene3D Tetratricopeptide repeat domain 230 419 IPR011990 GO:0005515
Amo13g0104 676 Pfam Tetratricopeptide repeat 584 611 - -
Amo13g0104 676 ProSiteProfiles TPR repeat profile. 260 293 IPR019734 GO:0005515
Amo13g0104 676 MobiDBLite consensus disorder prediction 1 152 - -
Amo13g0104 676 MobiDBLite consensus disorder prediction 93 123 - -
Amo13g0104 676 ProSiteProfiles TPR repeat profile. 383 416 IPR019734 GO:0005515
Amo13g0104 676 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 26 674 - -
Amo13g0104 676 Gene3D Tetratricopeptide repeat domain 495 582 IPR011990 GO:0005515
Amo13g0104 676 ProSiteProfiles TPR repeat profile. 616 649 IPR019734 GO:0005515
Amo13g0104 676 SMART tpr_5 260 293 IPR019734 GO:0005515
Amo13g0104 676 SMART tpr_5 512 545 IPR019734 GO:0005515
Amo13g0104 676 SMART tpr_5 169 202 IPR019734 GO:0005515
Amo13g0104 676 SMART tpr_5 616 649 IPR019734 GO:0005515
Amo13g0104 676 SMART tpr_5 582 615 IPR019734 GO:0005515
Amo13g0104 676 SMART tpr_5 546 579 IPR019734 GO:0005515
Amo13g0104 676 SMART tpr_5 383 416 IPR019734 GO:0005515
Amo13g0104 676 SMART tpr_5 294 327 IPR019734 GO:0005515
Amo13g0104 676 SUPERFAMILY TPR-like 368 575 IPR011990 GO:0005515
Amo13g0104 676 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 26 674 - -
Amo13g0104 676 MobiDBLite consensus disorder prediction 23 38 - -
Amo13g0104 676 Pfam Tetratricopeptide repeat 169 198 IPR019734 GO:0005515
Amo13g0104 676 Pfam Tetratricopeptide repeat 383 416 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0104 538 656 Glycosyltransferase AT3G11540 26.613 8.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0104 - - adu:107478871 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0104 13 1537488 1542999 Amo13g0104 13 1537488 1542999 ECH