Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0100 ATGGAAATGAAGAAGTTCTTATTAGCCTCTGCTCTTTCACTTACTCTGCTTCTCGGCTTGTCCTGGCAAGCCGAGAGCTTCGACTTCAGCGAGAAGGATCTCGCGTCGGAGGACAGCCTCTGGGAGCTGTATGAGAAGTGGAGGAGCCACCACACGGTGACTCGAAGCATCGACGAAAAACTCAAGAGATTCAATGTGTTCAAGGCCAATGTGATGCATGTCCACAACACTAACAAAATGGACAAGCCTTATAAGCTTAAGCTTAACATGTTTGCTGACTTGACCAATGATGAATTTAGAAGCTCCTATGCCGGATCAAGGATTGATCACCATAGAAGGTTCCATGGGACACTAAGAGGGGCAAAAGAAACATTCATGTATGAGAATGTTAAGGATGTTCCTGATTCTGTGGATTGGAGGCAGAAAGGTGCTGTTACTCCTGTCAAGAATCAAGCCAAATGTGGTAGTTGCTGGGCGTTTTCGACCATTGCAGCGGTCGAAGGAATCAACCAAATCAAGACAGGAAAGTTAGTATCATTGTCTGAACAAGAACTTGTGGATTGTGACAATGCAATCAATCAAGGGTGCAATGGTGGCCTAATGGTGTATGCTTTCAAGTACATCAAAGAAAAGGGTGGCATAACAACAGAGGAGAACTACCCTTATAAAGCAGTAAAAGGATCATGTGACACATTAAAGGCTAATGATAAAGCCGTGTCTATCGATGGCCACGAGACTGTCCCTGCGAACGACGAAGGTGCGTTGCTTAAAGCCGTCGCGAACCAGCCTGTGTCTGTAGCCATAGATGCCATGGGCTATGATATGCAGTTCTACAAAGAGGGAGTATACAACGGAACTTGTACCACACATCTAAACCATGGTGTGACCGCAGTTGGGTACGGCGTAACCAACGACGGAACCAAGTATTGGATTGTTAAGAATTCATGGGGGGATAAATGGGGAGAACAGGGTTACTTCAGAATACAAAGGGGAGTAACTCAGAAGGAAGGACAATGTGGCATAAATATGTTGGCTTCATACCCAATCAAAAACTCCTCTGCTAACCCAACAGGATCTTCATCTTTTCCCATTGATGAACTTTGA 1104 0.4502 MEMKKFLLASALSLTLLLGLSWQAESFDFSEKDLASEDSLWELYEKWRSHHTVTRSIDEKLKRFNVFKANVMHVHNTNKMDKPYKLKLNMFADLTNDEFRSSYAGSRIDHHRRFHGTLRGAKETFMYENVKDVPDSVDWRQKGAVTPVKNQAKCGSCWAFSTIAAVEGINQIKTGKLVSLSEQELVDCDNAINQGCNGGLMVYAFKYIKEKGGITTEENYPYKAVKGSCDTLKANDKAVSIDGHETVPANDEGALLKAVANQPVSVAIDAMGYDMQFYKEGVYNGTCTTHLNHGVTAVGYGVTNDGTKYWIVKNSWGDKWGEQGYFRIQRGVTQKEGQCGINMLASYPIKNSSANPTGSSSFPIDEL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0100 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 356 - -
Amo13g0100 367 SUPERFAMILY Cysteine proteinases 37 349 IPR038765 -
Amo13g0100 367 Gene3D Cysteine proteinases 19 351 - -
Amo13g0100 367 SMART Inhibitor_I29_2 44 99 IPR013201 -
Amo13g0100 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
Amo13g0100 367 CDD Peptidase_C1A 134 348 IPR039417 -
Amo13g0100 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 309 328 IPR025661 -
Amo13g0100 367 SMART pept_c1 133 349 IPR000668 GO:0006508|GO:0008234
Amo13g0100 367 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508|GO:0008234
Amo13g0100 367 PRINTS Papain cysteine protease (C1) family signature 293 303 IPR000668 GO:0006508|GO:0008234
Amo13g0100 367 PRINTS Papain cysteine protease (C1) family signature 309 315 IPR000668 GO:0006508|GO:0008234
Amo13g0100 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 291 301 IPR025660 -
Amo13g0100 367 Pfam Papain family cysteine protease 133 349 IPR000668 GO:0006508|GO:0008234
Amo13g0100 367 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 23 356 - -
Amo13g0100 367 Pfam Cathepsin propeptide inhibitor domain (I29) 44 99 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0100 Amo-Chr13 1486417 1488759 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0100 K16292 - gmx:548011 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0100 13 1486417 1488759 Amo13g0100 13 1486417 1488759 ECH