Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0029 ATGGATCCAAATCCAACTAACTTCCCAATCCTCTCTTACGTCATGTCTCGTCTCCCTTCTCTGACTCCCAAAACCGCCGCAGATTCCAATAATAACCTTGACGACCTCGAGCAGCCGCCTCCACTCTCCGATGCTGCTGCTGCTTCTTCTGTGGGCCCACTCGGCACACAATTATTGGGCCAGATGCCCAACCTTGACGACGCTAACCTCCTCGCCTCCATGGGCGGTGCAATCTCCGACGTCGCTCAGGCCCGATCGGTTCTCAATCTAATTGGCGACCGCCCTACTCACGAGGAAGTCGACGCCGCCAGGGCCGACCTTGCTGACCTGGAGGCCAGGCTGTCACGCCAGCTGGAGGAGATCGTTCTGGAGCCCAGGCCCGCTGACGTGGATATCCACACTTGGCGGGCCCGGCAGGCCGAGAGGGAGCTCAAGTGCAGGGAGGAAGCGGAGAAGGAGAGGCGTGTCGTCAAGTCGGTCATACAGCTCGATGAGATGCACGATGCGTACGAGAGGCTTCTTGCTGACGCCGAGAAGCGACTCGTTAGGATCTACGGCGGTGCCGGAGATGCCGCCGATGACGCCGGTGTTGCTGCTGCTGGTGATGAGCTGAACGAAGAGGTTGCGGAAATACTGCAGGAAGCTTACGGGAAAGGGATGGAGAGGGTGGATCTTTCTGGCCGGCGGTTGCGGTTGTTGCCGGAGGCGTTTGGGAGGATTTCCGGCCTTGTGGTGCTTGATGCATCCGCCAATCAGCTTTCGACAATTCCCGACTCGATAGCTGGATTGCAAAACCTGGAGGAGCTTAACCTATCTTCAAACCTTTTGACATCACTTCCAGATTCAATCGGATTATTGCAAAAACTGAAATTTCTCAATATCTCTGGAAATAAACTGAGTGCCCTTCCTGATCCCATCTGTCAATGCAGGTCATTGGTGGAGCTGGATGTGAGCTTTAACAGTCTGACATATTTGCCAACGAACATTGGATATGAATTGCCAAACTTAAAGAAACTCATGATTCAACTGAACAAGATTCGATCTCTACCCTCATCTATCTGTGAGTTGAAGTCGCTGCGCTATCTGGATGCTCACTTTAATGAGCTACATGGACTTCCCATTGCAATCGGGAGACTCACCAATCTGGAAGTTCTCAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTACCCGAGACATTTGGTGATTTGACTAACCTCAAAGAATTAGATCTCAGCAACAATCAGATTCATGCACTTCCTGATACATTTGGTCGCCTTGAAAATTTGACGAAGCTTAACTTGGATCAGAATCCTATTGAATTACCACCAATGGAGATTGTAAATCAAGGCGTCGAGGCTGTAAAAACCTTTATGGCGAAGAGATGGATTGATATATTGCTAGAGGAAGAAAGGAAAAGCAACCAAGAAATGCAAGAGCAAGCACAGAATGGATGGTTAACACGAAGCACATCGTGGTTGAAGAATGTTTCCGGGAATGTAATTGGGTATCTTGGAACAGTTGGATCACCCATGGCACCCAAATTACCCAGAGATGCTTATCTTGATCAGCAGCTATGA 1581 0.5016 MDPNPTNFPILSYVMSRLPSLTPKTAADSNNNLDDLEQPPPLSDAAAASSVGPLGTQLLGQMPNLDDANLLASMGGAISDVAQARSVLNLIGDRPTHEEVDAARADLADLEARLSRQLEEIVLEPRPADVDIHTWRARQAERELKCREEAEKERRVVKSVIQLDEMHDAYERLLADAEKRLVRIYGGAGDAADDAGVAAAGDELNEEVAEILQEAYGKGMERVDLSGRRLRLLPEAFGRISGLVVLDASANQLSTIPDSIAGLQNLEELNLSSNLLTSLPDSIGLLQKLKFLNISGNKLSALPDPICQCRSLVELDVSFNSLTYLPTNIGYELPNLKKLMIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLKELDLSNNQIHALPDTFGRLENLTKLNLDQNPIELPPMEIVNQGVEAVKTFMAKRWIDILLEEERKSNQEMQEQAQNGWLTRSTSWLKNVSGNVIGYLGTVGSPMAPKLPRDAYLDQQL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0029 526 MobiDBLite consensus disorder prediction 22 37 - -
Amo13g0029 526 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 509 - -
Amo13g0029 526 Gene3D Ribonuclease Inhibitor 197 345 IPR032675 -
Amo13g0029 526 MobiDBLite consensus disorder prediction 22 49 - -
Amo13g0029 526 PRINTS Leucine-rich repeat signature 404 417 - -
Amo13g0029 526 PRINTS Leucine-rich repeat signature 266 279 - -
Amo13g0029 526 SUPERFAMILY L domain-like 219 445 - -
Amo13g0029 526 SMART LRR_bac_2 309 328 - -
Amo13g0029 526 SMART LRR_bac_2 379 400 - -
Amo13g0029 526 SMART LRR_bac_2 333 352 - -
Amo13g0029 526 SMART LRR_bac_2 263 282 - -
Amo13g0029 526 SMART LRR_bac_2 356 375 - -
Amo13g0029 526 SMART LRR_bac_2 404 423 - -
Amo13g0029 526 SMART LRR_bac_2 240 259 - -
Amo13g0029 526 SMART LRR_bac_2 286 305 - -
Amo13g0029 526 Coils Coil 160 180 - -
Amo13g0029 526 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 3 509 - -
Amo13g0029 526 Coils Coil 100 120 - -
Amo13g0029 526 Gene3D Ribonuclease Inhibitor 346 460 IPR032675 -
Amo13g0029 526 ProSiteProfiles Leucine-rich repeat profile. 406 427 IPR001611 GO:0005515
Amo13g0029 526 Coils Coil 464 484 - -
Amo13g0029 526 Pfam Leucine rich repeat 381 440 IPR001611 GO:0005515
Amo13g0029 526 Pfam Leucine rich repeat 242 299 IPR001611 GO:0005515
Amo13g0029 526 Pfam Leucine rich repeat 310 369 IPR001611 GO:0005515
Amo13g0029 526 ProSiteProfiles Leucine-rich repeat profile. 288 309 IPR001611 GO:0005515
Amo13g0029 526 ProSiteProfiles Leucine-rich repeat profile. 265 286 IPR001611 GO:0005515
Amo13g0029 526 SMART LRR_typ_2 310 332 IPR003591 -
Amo13g0029 526 SMART LRR_typ_2 427 450 IPR003591 -
Amo13g0029 526 SMART LRR_typ_2 286 309 IPR003591 -
Amo13g0029 526 SMART LRR_typ_2 379 403 IPR003591 -
Amo13g0029 526 SMART LRR_typ_2 263 285 IPR003591 -
Amo13g0029 526 SMART LRR_typ_2 240 262 IPR003591 -
Amo13g0029 526 SMART LRR_typ_2 333 356 IPR003591 -
Amo13g0029 526 SMART LRR_typ_2 404 426 IPR003591 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0029 251 443 Receptor kinase-like Gene Family AT5G25910 33.014 1.07e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0029 - - gmx:100803823 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0029 13 643170 646978 Amo13g0029 13 643170 646978 ECH