Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0028 ATGGGGAGGTTGTGTGTTTGTGTATTGGAAGCAAAAGATCTTCCAGTGAATGAGTCTTATGTGAAGCTCAAGCTTGGGAAGTTGAAGTCTAAAACTACAAGGATAGTGAGGAACACTTGCAACCCAATTTGGAATGAGGAGTTTGCTTTGAAGGTGCATGATTTGGAGCAAGTGCTTCTTGTCTCTGTTGTTAGTAATACTCATCATGGTGGTGGTGATGAATCAAGGGTCATCAATGGTGGTTCTGTGGAACTTGTGGTTGGTGAAGTGAGGGTTCTTGTTGGTTCTATTGCTTCTGCTGATAAACAAACCTTGCCCCCAACTTGGTTCAATCTTCAAAGTCCTAATAGTGGGAAATTTTTCAACAAATATTGCGGGAAAATTCTACTTACCATATCTCTTCATAGTAAAAGCCATTTTAACCACACACATTCACAAAACTTGAGTGTTGCAACTGAAGACTCAAAAGACTTGGAATCTCCACAAATTTCATCTAACAAAATGAGTGAAACTAAAAAGTTGCTGAAGGTTATTGCTAACCGTTTAGATAGGATCTTCAACAAGAAAGATGGAAGTTCATCAAAAGCTGAGGATTCTCCCGAAACATCCACTATTTTATCTGATTCTGAAGATTTTGTAGAAAGTTTATCTTCTCCTTGTAGCTTTGAAGAAGCAATTGCACTAATGGAATCCGGAGATAACAAACAGGAGATGCCAGATAACTTGCCGGGTGGTGTTCTGGTGGATCAGGTTTATGCAGTATCTCCATATGATCTTAATGCATTTCTTTTCGCACCAAATTCACAGTTTAGGAAAGATTTGGCAGAACTGCAGGGGACAACAAATATGCAAGAAGGGCCTTGGACATGGAAACATGGGGACACATCTTGTTTAATGCGAGTTGTTTCGTATACAAAAGCAGCTTCGAAGCTAGTTAAGGCTGTTAATGCCACTGAAGAGCAAAGCTATGTTAGAGTGAGTAAGGATGAATTTGCAGTACTTGTTAGTGTAAGCACACCTGAGGTTCCATATGGGAGCACATTTCGGGTTGAATTGCTTTACAAGATAATGCCGAGTGGCGAATTATCTTCTGGAGAGAAATCATCACATCTTGTGGTATCATGGGGCATGATGTTCCTACAGAGCACAATGATGAAAGGAATGATAGAAGGGGGAACTAGACAAGGACTGAAGGAGAGTTTTGATCAGTTCTCCGACCTACTTGCTCGAAATTTCAAGGTGCTAGATTTGGCAGACTTATCAGACAAGGAACATTTGTTGGCAACTTTGCAGACAGAGGACCCTTGGAATTGGTGGATGGCAATCAAATACTTTTCGAATTTCACGGTAGCTTCCACTTTGTTTATGTTTTTATATGTTTTGCTGCATATTTCGCGGTGCGGTCCGAGGGAACCTCGCGGCTTGGAATTCAAGGGACTTGAATTGCCAGATAGCTTTGGAGAGCTTGTTACAAGTGCAATTTTGATCATTCAGTTGCATCGTGTTTACAATATGGTTGTTCACTTTGTGCAGGCTAGATTTCAGATGGGAACTGATCATGGCCTAAAAGCCAACGGGGATGGTTGGGTTGTTACAGTGGCTTTAATTGAGGCGGTCGACTTGGCATCCTTGGAGTCCACAGGGTTGTCGGACCCCTATGTAATTTTAACCTGCAATGGACAAACAAGGTCAAGCTCAGTGAAGCTTCAAACATCTGATCCTCAATGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCACCATCGGTTTTAGATGTGGAAGTTTTCGATTTTGATGGTCCATTTGACCAGGATGTTTCGCTAGGACGTGCCGAGATCAATTTCCTAAAGCACACATCGACAGAATTGGCCGACATGTGGATTGTGCTTGAAGGAAAGCTCGCTAAGTCCGCACAATCGAAGTTGCATCTGAGGATTTTCTTGGACAATAATAAAGGAGTCGAAACGATTAAGGAATATTTGGAGAAAATGGAAAAGGAAGTAGGAAGAAAGTTGAATCTTCAATCGCCTCAACGAAATTCTACATTCCAGAAACTGTTTGGTTTGCCTCCAGAAGAATTTCTAATCAAAGAATTCACATGTTACCTGAAGAGAAAAATGCCTTTACAGGGAAGGATGTTTCTTTCAGCTAGGATTCTTGGGTTTTATGCCAATCTTTTTGGACATAAAACCAAATTTTTCTTCCTTTGGGAAGACATAGAGGACATACAAGTTCATCCTCCAACATGGGCATCAGTAGGAAGCCCTATACTGGTCATAATTCTGCGGAAAGGTCGAGGAATCGATGCAAGGCATGGCGCAAAGTCTATAGACGAAGAAGGAAGGCTTAGGTTCCATTTTCAGTCATTTGCATCGTTCGGTGTGGCCTCCAGAACGATTCGAGCCTTGTGGAGAGCAAGAACACTGCCCTACCAGAAAGAACAAGTTATGGAAGAGCATGAAGAACAAGAAGAACGCTTTGTAATTCCTGAAGACTCTGAATATGTCATGGACAATGAAGGAAAAGGATCCAAGATATATTCTGCAGAATTTCCAATCAAGATGAGATCAATGATGGGAATTTTTGATGGAGGAAGCTTGGAACATAGAATTATGCAGAGAGCAGGTTGTATGAACTATGAAACTACTTCGTGGGAGCCGATAAAGCCGGACGTCTTTGAAAGGCGCGTTTCGTACAGATTCAATCGTCAAATGTCGGTTTTCGGCGGCGATGTCACATGCACACAACAGAAGTTTCCAAATGCAGACACTGGAGGTTGGATTGTGAATGAGGTTATGACTCTTCATGGTGTCCCATTTGCTGATCACTTCCATATAAATTTTAGGTACGAAATTGAGAAATGTGGTATTGATGAAAGTGGTTGCAAGTGTGATATATACATTGGAATTGTGTGGCTCAAGAGCTCTGATTTTCAGCAAAGGATAGATAGGAACATATCAACCAAGTTTACCATTAGAGTGAAGGAAATATTTGAACAGGTTCAGAAAGAGATCTTGTTAATGTCTCAGAATTTTAATGGGCATTAG 3051 0.411 MGRLCVCVLEAKDLPVNESYVKLKLGKLKSKTTRIVRNTCNPIWNEEFALKVHDLEQVLLVSVVSNTHHGGGDESRVINGGSVELVVGEVRVLVGSIASADKQTLPPTWFNLQSPNSGKFFNKYCGKILLTISLHSKSHFNHTHSQNLSVATEDSKDLESPQISSNKMSETKKLLKVIANRLDRIFNKKDGSSSKAEDSPETSTILSDSEDFVESLSSPCSFEEAIALMESGDNKQEMPDNLPGGVLVDQVYAVSPYDLNAFLFAPNSQFRKDLAELQGTTNMQEGPWTWKHGDTSCLMRVVSYTKAASKLVKAVNATEEQSYVRVSKDEFAVLVSVSTPEVPYGSTFRVELLYKIMPSGELSSGEKSSHLVVSWGMMFLQSTMMKGMIEGGTRQGLKESFDQFSDLLARNFKVLDLADLSDKEHLLATLQTEDPWNWWMAIKYFSNFTVASTLFMFLYVLLHISRCGPREPRGLEFKGLELPDSFGELVTSAILIIQLHRVYNMVVHFVQARFQMGTDHGLKANGDGWVVTVALIEAVDLASLESTGLSDPYVILTCNGQTRSSSVKLQTSDPQWNEILEFDAMEEPPSVLDVEVFDFDGPFDQDVSLGRAEINFLKHTSTELADMWIVLEGKLAKSAQSKLHLRIFLDNNKGVETIKEYLEKMEKEVGRKLNLQSPQRNSTFQKLFGLPPEEFLIKEFTCYLKRKMPLQGRMFLSARILGFYANLFGHKTKFFFLWEDIEDIQVHPPTWASVGSPILVIILRKGRGIDARHGAKSIDEEGRLRFHFQSFASFGVASRTIRALWRARTLPYQKEQVMEEHEEQEERFVIPEDSEYVMDNEGKGSKIYSAEFPIKMRSMMGIFDGGSLEHRIMQRAGCMNYETTSWEPIKPDVFERRVSYRFNRQMSVFGGDVTCTQQKFPNADTGGWIVNEVMTLHGVPFADHFHINFRYEIEKCGIDESGCKCDIYIGIVWLKSSDFQQRIDRNISTKFTIRVKEIFEQVQKEILLMSQNFNGH* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0028 1016 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Amo13g0028 1016 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 3 1012 - -
Amo13g0028 1016 ProSiteProfiles VASt domain profile. 243 416 IPR031968 -
Amo13g0028 1016 SMART gram2001c 682 748 IPR004182 -
Amo13g0028 1016 Pfam C2 domain 530 629 IPR000008 -
Amo13g0028 1016 Pfam C2 domain 2 111 IPR000008 -
Amo13g0028 1016 ProSiteProfiles C2 domain profile. 510 629 IPR000008 -
Amo13g0028 1016 Pfam VAD1 Analog of StAR-related lipid transfer domain 847 987 IPR031968 -
Amo13g0028 1016 Pfam VAD1 Analog of StAR-related lipid transfer domain 247 396 IPR031968 -
Amo13g0028 1016 Pfam GRAM domain 683 765 IPR004182 -
Amo13g0028 1016 Gene3D C2 domain 510 649 IPR035892 -
Amo13g0028 1016 MobiDBLite consensus disorder prediction 189 209 - -
Amo13g0028 1016 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 529 653 IPR035892 -
Amo13g0028 1016 SMART C2_3c 3 106 IPR000008 -
Amo13g0028 1016 SMART C2_3c 530 629 IPR000008 -
Amo13g0028 1016 CDD C2 531 631 - -
Amo13g0028 1016 Gene3D C2 domain 1 169 IPR035892 -
Amo13g0028 1016 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 140 IPR035892 -
Amo13g0028 1016 Gene3D - 680 807 IPR011993 -
Amo13g0028 1016 ProSiteProfiles VASt domain profile. 843 1006 IPR031968 -
Amo13g0028 1016 PANTHER BNAA05G37250D PROTEIN 3 1012 IPR044511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0028 Amo-Chr13 631450 637326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0028 8 183 Lipid Metabolism Gene Families AT4G20080 26.064 4.75e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0028 - - gmx:100817914 1527.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0028 13 631450 637326 Amo13g0028 13 631450 637326 ECH