Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3412 ATGGCTTTAGAATCCCACAATATGAAGCATCAACTCCATTTTCTTTTAGTACCATATTTGTGTCCTGGTCACCTTATTCCCATGGTAGACATAGCAAGGCTACTAGTAAACCATGGAGCTTTTGTAACATTCGTCACCACGCCCCTTAACGTGAAACGTATCAAGCCACTGATTGACACTGTCAATGCATCAAAATTACGAATTCGGCTTATCCAATTCGAGATTCCAGTTCTCGAATTTGGATTGCCAGAAGGGTGTGAAAGCTTGGAGCTAGTTCCTTCGCGCGCCTTAATAAGAAGCTTCATGTTTGCTCTTAGCAAGTTGCAAACACCAATAGAAGAGTTGATTGAGGCAAGCCCAATAAGTTGCATTCTAGTTGACAAATTCAACTATTGGATGGAAAATGTTGCTATGAAGTTCCAAATCCCAAGGCTTATATTTGATGGCACAAGTTGCATGAATCTTCTATTGTTGCACAATTTGTTCAAGTCCAAGGTGTATGAGAATGTCCAAGAATCAAAGCCTATTGTGGTGCCTAATTTGCCACACAGAATTGAGTTAACAAAATCACAACTTCCATTGGAATTGAATCCTGAAGCAAAGGATCTCAGAGATCTTGATGAAAAGATTAGAACTTCACAAGAATCAGCATATGGGTATTCTTTTGTAATTATAAATAAATGCAATCTAATATATAACAATATCTTGGCAAAGCAAAAAGGTGTGATTGTAACCTTAGTTACCACAGCAATGAATGCCTCAAGATTTGAGGACACAATTTTTAGAGCAAGATTTGAACAAGGCCTCCAAATCTATCCCTTGATAATCCCATTCCAATGCCAACAAGTTGGTCTACCATTTGCCTGTGAGAATCTAGATACCTTGCCATCAAGAAACCTTCTTAGGAGATTCTACAATGCACTTGACATGCTTCAAGAACCTTTGGAACACTACCTTCAAACTCATGATCATGCACCAAGTTGCATTATCTCCGATAAGTGCCTATCTTGGACTTCTATCACCGCCACAAGGTTCAAGATTCCAAGGCTTGTGTTCCATGGCATGTCATGTTTCTCATTGCTAAGCTCCTACAATATCAAGCTCCACAACTCACATGCTTTAGTCTCTAGTGACTTGGAGCGATTTGTGATACCGGGGCTTCCTCATATTCATCAGAATATTGAGATATCAAGGGCACAGCTTCCAGGAGCTTTTGTTGCGCTTCCGGATTTGGATGATTATAGGGACAAAATGCGCGAGGCGGAGATGTCTTCCCATGGTATTGTGATGAATAGTTTTGAGGAATTGGAAAAGGGTTGTATTGAGGAGTACCAAAGAGTGATGAACAAGAGGGTTTGGTGCATGGGACCAGTTTCCTTGATCAACAAGGCAAGTTTGGACATGTTTGAGAGAGGGAACAAACCTTCCATTGAAGAAAGCCAATGCTTGGAATGGCTAACATTGATGGAGCCAAGGTCAGTCATCTATGTATGCCTTGGTAGCTTGTGTAGGCTTGTAACATCACAATTGATAGAAATAGGGTTAGGTTTAGAAGCATCAAATAGGCCATTCATTTGGGTGGTAAAAAATGCTGATGAAAGTTCATCATTAGAGCTAGAAAAATGGTTAGAGGATGAGGGTTTTGAAAGAAGGGTCAAAGGGAGAGGACTTTTGATTAAGGGTTGGGCACCACAAATTATGATACTATCACACCCTTCAATTGGAGGCTTCTTAACTCATTGTGGTTGGAATTCAACAATTGAAGGTGTTTCGTTTGGGATACCATTGATAACTTGGCCTTTATTTGCTGAACAATTCTTGAATGAGAAGTTTGTTGTGGAAATTTTGAAGGTTGGAGTTAGAATAGGAGTTGAGGTTCCGGTAAGGTTTGGTGATGAAAAAAAATGTGGGATTTTGGTGACGAAAAATAGGGTTATGGAAGCTGTAGAGATGTGTATGGAGGGAGGTGAAGAAGGGAGAAAGAGAAGAGATAGGGCAATACAACTTGGAAAGATTGCAAGAAAGTCTTTAGAAGAAGGTGGTTCATCTGGCTTGAGCATTTCATGCTTAATTCAAGATATTAAGGACCATCAATCATCAAAAGGGGAGGCATAA 2115 0.4 MALESHNMKHQLHFLLVPYLCPGHLIPMVDIARLLVNHGAFVTFVTTPLNVKRIKPLIDTVNASKLRIRLIQFEIPVLEFGLPEGCESLELVPSRALIRSFMFALSKLQTPIEELIEASPISCILVDKFNYWMENVAMKFQIPRLIFDGTSCMNLLLLHNLFKSKVYENVQESKPIVVPNLPHRIELTKSQLPLELNPEAKDLRDLDEKIRTSQESAYGYSFVIINKCNLIYNNILAKQKGVIVTLVTTAMNASRFEDTIFRARFEQGLQIYPLIIPFQCQQVGLPFACENLDTLPSRNLLRRFYNALDMLQEPLEHYLQTHDHAPSCIISDKCLSWTSITATRFKIPRLVFHGMSCFSLLSSYNIKLHNSHALVSSDLERFVIPGLPHIHQNIEISRAQLPGAFVALPDLDDYRDKMREAEMSSHGIVMNSFEELEKGCIEEYQRVMNKRVWCMGPVSLINKASLDMFERGNKPSIEESQCLEWLTLMEPRSVIYVCLGSLCRLVTSQLIEIGLGLEASNRPFIWVVKNADESSSLELEKWLEDEGFERRVKGRGLLIKGWAPQIMILSHPSIGGFLTHCGWNSTIEGVSFGIPLITWPLFAEQFLNEKFVVEILKVGVRIGVEVPVRFGDEKKCGILVTKNRVMEAVEMCMEGGEEGRKRRDRAIQLGKIARKSLEEGGSSGLSISCLIQDIKDHQSSKGEA* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3412 704 PANTHER GLYCOSYLTRANSFERASE 7 226 - -
Amo12g3412 704 Gene3D Glycogen Phosphorylase B; 4 231 - -
Amo12g3412 704 PANTHER PHOSPHATIDYLCHOLINE:DIACYLGLYCEROL CHOLINEPHOSPHOTRANSFERASE 1-RELATED 7 226 - -
Amo12g3412 704 ProSitePatterns UDP-glycosyltransferases signature. 562 605 IPR035595 -
Amo12g3412 704 Gene3D Glycogen Phosphorylase B; 235 685 - -
Amo12g3412 704 PANTHER PHOSPHATIDYLCHOLINE:DIACYLGLYCEROL CHOLINEPHOSPHOTRANSFERASE 1-RELATED 236 700 - -
Amo12g3412 704 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 234 698 - -
Amo12g3412 704 Gene3D Glycogen Phosphorylase B; 472 675 - -
Amo12g3412 704 PANTHER GLYCOSYLTRANSFERASE 236 700 - -
Amo12g3412 704 CDD GT1_Gtf-like 236 683 IPR002213 GO:0008194
Amo12g3412 704 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 12 226 - -
Amo12g3412 704 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 492 612 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3412 Amo-Chr12 123289676 123300626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3412 236 694 Glycosyltransferase AT2G36780 48.373 2.72e-151 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3412 - - ccaj:109818058 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g1451 06 40842098 40846292 Amo12g3412 12 123289676 123300626 PCT
Amo12g3412 12 123289676 123300626 Amo06g1451 06 40842098 40846292 PCT