Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2880 ATGCCGAACCACGATATAACCTCCCCTCTCATCACCTCCGATCATCTCATCCTCACCGTCGACCCACTCCCCGCCGCCGACACCACTTCCGCAGCTCCACTTTCCGGCACCGCCGGAGGGAATCCTTTTACTTTTCTGGGATGCGATGAGAGTGAAGCGTTGACTGTGCCGGTTCCGATGACCGTTGACCCGTTCAAGAACAACACGCCGAATATTGAGGGAGTCTACGAGTGGTTGAAGATGCTTCTGTGCTTGCCAATTGCGATTCTCAGGCTTGTGCTTTTCGGATTGTGCCTTGCTGTTGGGTATATTGCAACGAGGTTGGCGTTGGAAGGGTGGAAGGACAAGGAGAACCCCATGCCTAAGTGGAGGTGCAGGCTCATGTGGGTTACAAGGATTTGCGCCAGATGGATCCTCTTCTCTTTTGGCTATCAGTGGATAAAGCGGAAGGGAAGACCTGCACCAAGGGAAGTTGCACCGATAATTGTATCTAATCACGTATCCTACATTGAACCTATCTTCTATTTCTATGAATTATTTCCAACCATTGTAGCATCAGAGTCTCATGATGCACTACCTTTTGTTGGCACCATTATTAGAGCAATGCAGGTCATATATGTCGACAGGTTCTCACCATCATCAAGAAAACATGCCGTCAAGGAAATAAAGAGAAGGGCTTCCTGCAATAGATTTCCTCGAGTACTGCTATTTCCTGAGGGAACCACAACTAATGGCAGGAGCCTTATCTCCTTCCAACTTGGTGCATTCATCCCCGGTTACCCAATCCAGCCTGTAATTGTTCGCTATCCTCATGTACACTTTGATCAATCTTGGGGTAATGTTTCTTTGGGAAAGCTTATGTTCAGGATGTTCACTCAATTCCACAACTTCTTCGAGGTAGAATATCTTCCTGTCATTTCACCCCTGCATGATAAGGAAACTGCAGTCCACTTTCGTGAGAGGGCTTGCCGTGCTATTGCATCTGCGATGAATGTTGTCCAAACTGGACACACTTATGGAGACATAATGCTTTATATGAAAGCACAAGAAGCAAAACAGGAAAACCCCTCAAGTTTTATGGTTGAAATGGCGAGGGTGGAATCATTATTTCATATCAGAAGCTTGGAAGCTGTTGAATTCCTAGATAAATTCTTGGCTATGAATCCTGATCCCAGCGGTCGAGTTCAATATCATAACTTCTTGAAGGTTTTAAGACTTAAGGCATGCCCTTTATCCGAAAAGATGTTTGCATTCATTGATGTGGAGAAGTGCGGCTCAATAACGTTTAGACAGTTCTTGTACGGATCTGCTTACGTCATGAAGCATCGAGGATTCCATCAAGCTTGCGAAGAAGCATTTGCGGAATGCAGCAGTGCAGTAAAGGGCTACATTGTAGAACAAGAATTGCAAGATTTCATGCAACATGCCATCCCAAGCTGGAATGAGAATGAGGTTCATGAGCTTTTTATGTTATTTGATGATGACAATGATGGAAGAATAACCAAGGATGATTTTCATTCATGCCTCAAGAAAAACCCTCTTCTCATTGCATTTCTTACACCTCACCTTCAACACAAGGAGTGTGATGGCAATAATGGAGTTATAGAAATAGTATGA 1617 0.4465 MPNHDITSPLITSDHLILTVDPLPAADTTSAAPLSGTAGGNPFTFLGCDESEALTVPVPMTVDPFKNNTPNIEGVYEWLKMLLCLPIAILRLVLFGLCLAVGYIATRLALEGWKDKENPMPKWRCRLMWVTRICARWILFSFGYQWIKRKGRPAPREVAPIIVSNHVSYIEPIFYFYELFPTIVASESHDALPFVGTIIRAMQVIYVDRFSPSSRKHAVKEIKRRASCNRFPRVLLFPEGTTTNGRSLISFQLGAFIPGYPIQPVIVRYPHVHFDQSWGNVSLGKLMFRMFTQFHNFFEVEYLPVISPLHDKETAVHFRERACRAIASAMNVVQTGHTYGDIMLYMKAQEAKQENPSSFMVEMARVESLFHIRSLEAVEFLDKFLAMNPDPSGRVQYHNFLKVLRLKACPLSEKMFAFIDVEKCGSITFRQFLYGSAYVMKHRGFHQACEEAFAECSSAVKGYIVEQELQDFMQHAIPSWNENEVHELFMLFDDDNDGRITKDDFHSCLKKNPLLIAFLTPHLQHKECDGNNGVIEIV* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2880 538 Gene3D - 362 515 - -
Amo12g2880 538 Pfam Acyltransferase 157 264 IPR002123 GO:0016746
Amo12g2880 538 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Amo12g2880 538 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Amo12g2880 538 SUPERFAMILY EF-hand 374 523 IPR011992 -
Amo12g2880 538 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 38 522 - -
Amo12g2880 538 CDD LPLAT_LPCAT1-like 135 343 IPR045252 GO:0008374
Amo12g2880 538 Pfam EF-hand domain pair 462 511 IPR002048 GO:0005509
Amo12g2880 538 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 97 336 - -
Amo12g2880 538 CDD EFh 449 505 IPR002048 GO:0005509
Amo12g2880 538 SMART plsc_2 160 270 IPR002123 GO:0016746
Amo12g2880 538 PANTHER LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 1-RELATED 38 522 - -
Amo12g2880 538 SMART efh_1 484 512 IPR002048 GO:0005509
Amo12g2880 538 SMART efh_1 448 476 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2880 Amo-Chr12 115438317 115444490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2880 110 345 Acyl Lipid Metabolism Gene Families AT1G80950 31.203 1.89e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2880 K13510 - gmx:100818109 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2880 12 115438317 115444490 Amo12g2880 12 115438317 115444490 ECH