Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2823 ATGAATCTGTCAAGGCAGTTCCAACAAGTGTTCAAGCTCATTGATTCCAATGGTGATGGAAAAATCTCAACCACTGAGCTCAGTGAAACTCTTCTATGTCTTGGATACAACAAGTGCATGGCTAAAAAAGAAGCTGAGAGAATGGTGAGAGCTTTGGACTTTAATGGAGATGGGTTTGTTGACTTTGATGAATTCATGGTTGTGATGAGAGAAGGAATAGCAACAACAGAAGAAGGTGGCAAGAACAATAACAATATTGATCAAGATGAGTATCTTATGGATGCTTTTCATGTGTTTGATTCTGATAAGAATGGATTAATCTCTGCTAAGGAATTGAGGAGAGTTTTGGTTAATCTTGGGTGTGATCGTTGCAGCATCAGAGAGTGTAAGCGTATGATCAAAAGTGTTGACAAGAATGGTGATGGGTTTGTTGATTTTGATGAATTTAGATCCATGATGAAAAAGGGACTTTCCAAATCCAAACAAAATTAG 492 0.376 MNLSRQFQQVFKLIDSNGDGKISTTELSETLLCLGYNKCMAKKEAERMVRALDFNGDGFVDFDEFMVVMREGIATTEEGGKNNNNIDQDEYLMDAFHVFDSDKNGLISAKELRRVLVNLGCDRCSIRECKRMIKSVDKNGDGFVDFDEFRSMMKKGLSKSKQN* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2823 163 PANTHER CALCIUM-BINDING PROTEIN CML26-RELATED 6 156 - -
Amo12g2823 163 Pfam EF-hand domain pair 6 70 IPR002048 GO:0005509
Amo12g2823 163 Pfam EF-hand domain pair 90 154 IPR002048 GO:0005509
Amo12g2823 163 Gene3D - 3 75 - -
Amo12g2823 163 SMART efh_1 128 156 IPR002048 GO:0005509
Amo12g2823 163 SMART efh_1 6 34 IPR002048 GO:0005509
Amo12g2823 163 SMART efh_1 91 119 IPR002048 GO:0005509
Amo12g2823 163 SMART efh_1 44 72 IPR002048 GO:0005509
Amo12g2823 163 ProSitePatterns S-100/ICaBP type calcium binding protein signature. 48 69 IPR001751 -
Amo12g2823 163 CDD EFh 6 70 IPR002048 GO:0005509
Amo12g2823 163 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Amo12g2823 163 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Amo12g2823 163 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Amo12g2823 163 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Amo12g2823 163 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Amo12g2823 163 CDD EFh 91 154 IPR002048 GO:0005509
Amo12g2823 163 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 156 - -
Amo12g2823 163 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Amo12g2823 163 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Amo12g2823 163 SUPERFAMILY EF-hand 5 155 IPR011992 -
Amo12g2823 163 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Amo12g2823 163 Gene3D - 76 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2823 Amo-Chr12 114457718 114458731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2823 92 159 EF-hand Containing Proteins AT1G24620 33.824 3.20e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2823 - - aip:107628548 311.997