Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2406 ATGAAGAAGCAGAAACTACTCCACCCAACTATGGACCACGGTAGAAACAACCCCTTCGATGCGTTATCGGAAGAACTCATCTTCATAATCCTCGATTTCCTCGAAAACCAACCATCTTCGCTCAAATCGTTCGCTCTTGTTTGCCGCTCTTTCCACTCACTTGAATCCCGCCACCGCCGCAACCTCCGACCACTGCGCTCCGACCACCACAACCTCACGCGCCTCCTCACACGCTACCCGAACCTCTCCAACCTCGACCTAACCCTCTGCCCGCGCGTCACTGATCCGACGCTCAACTCGCTAGCCGGCGCGTGCGGCCACGCGCTCCGCCGACTKGATCTCTCCAGGTCGAGATTCTTCACCGCCGCGGGGCTGACGAGCGTGGTTGTCAACTGCCCGAACTTGGCGGAGCTGGATTTGTCGAACGCGACGGAACTGAGGGACGCGGCGGCGGCGGCGGTGGCGCGTGCGAAGAATTTAGAGAAGCTGTGGCTGGCTAGGTGTAAGCTCGTTACGGACATGGGGATCGGGTGTATAGCGGTGGGTTGCAGGAAGCTGAAGTTGATAAGCTTGAAATGGTGCGTTGGTGTTGGTGATTTGGGGGTTGAGTTGCTTGCGATCAAGTGCAAGGACCTTCAGAGTTTGGATCTSTCCTATTTGCCTATCACAGACAAATGCCTGCAATCAATATTTAAGTTGCAACATCTTGAAGATTTGGTCCTTGAAGGATGCTATGGCATTGATGATGACAGCCTTGCAGACGATGTCTTCAAACAAGGGTGCAGGACGCTAAAGAAACTTGATATCAAAGGTTGTCAAAATATTAGTCATGTTGGTCTGGCCAAGTTAACAAGTATTTCTGGATGCATGGAGCAACTCATCCTGGCAGATGGCTCTCCTGTGACTGTTGCTCTTGCTGATGGTTTGAGTAAACTCTCCATGTTGCAATCAATTGTATTAGACGGCTGCCTGGTTACCTGTGCTGGATTAAGGGCCATTGGAAATTTGTGCATTTCACTTCGGGAACTAAGTCTAAGCAAATGCATGGGAGTGACGGATGAAGCTCTMTCATTTCTYGTGTCTAAACACAGAGATTTGAGGAAGCTTGATATCACGTGCTGCCGCAAGATAACTGACGTCTCCATTGCCAGCATTGCGAATTCTTGCACTAATCTCACATCTCTCAGAATGGAGTCGTGCACTCTAGTTTCACAAGAAGCATTTATCTTGATTGGACAGAAGTGCCATTCACTTCAGGAGCTTGACCTAACAGATAATGAAATTGACGATGAAGGTCTTAAGTCCATTTCTCGTTGTTCAAGACTCTCCGTCCTGAAAGTAGGAATTTGCTTGAACATAACGGACAGAGGACTCGCCTATGTCGGCATGTGCTGCTCAAATTTAAAGGAGCTGGATCTCTACAGGTCCACAGGAATAACAGATTTGGGCATTTCAGCAATTGCTCACGGTTGCCCTCGCCTTGAGACAATAAATGCAGCCTATTGTACTAGTATCAGTGATAGTGCATTGATCTCCTTGTCTAAATGTCCGAATTTGAAGACCCTTGAAATTCGTGGATGTGTTCTTGTTACATCGCTAGGTCTAACAGTTATTGCAATGAGTTGCAGACAACTACGCCGGGTAGACATCAAGAAGTGTTACAACATTGATGATAGCGGGATGATTCAGCTGGCTCATTTCTCCCAAAATCTAAGACAGATTAATTTGTCGTATAGTTCGGTTACAGATGTCGGGCTGCTGTCACTTGCTAGTATCAGTTCCCTACAAAGTTTTGTCCTGCTTCACCAGCAGGGCCTGGCTCCAGGAGGACTTGCTGCGGCCTTGTTGACATGCGGAGGGCTCACAAAAGTAAAGCTCCATAGTTCGACAAGATTTATGCTACCAGAGCAGCTTATAAAACACATAGAAGCACGAGGTTGTGTGTTTGAATGGAGAGACAAAGTATTTCAGGCCGAATTGGATCCCAAGTGTTGGAAATTACAGGTAGAAGATATAATGCCACATGATTTTCACTGA 2037 0.4777 MKKQKLLHPTMDHGRNNPFDALSEELIFIILDFLENQPSSLKSFALVCRSFHSLESRHRRNLRPLRSDHHNLTRLLTRYPNLSNLDLTLCPRVTDPTLNSLAGACGHALRRLDLSRSRFFTAAGLTSVVVNCPNLAELDLSNATELRDAAAAAVARAKNLEKLWLARCKLVTDMGIGCIAVGCRKLKLISLKWCVGVGDLGVELLAIKCKDLQSLDLSYLPITDKCLQSIFKLQHLEDLVLEGCYGIDDDSLADDVFKQGCRTLKKLDIKGCQNISHVGLAKLTSISGCMEQLILADGSPVTVALADGLSKLSMLQSIVLDGCLVTCAGLRAIGNLCISLRELSLSKCMGVTDEALSFLVSKHRDLRKLDITCCRKITDVSIASIANSCTNLTSLRMESCTLVSQEAFILIGQKCHSLQELDLTDNEIDDEGLKSISRCSRLSVLKVGICLNITDRGLAYVGMCCSNLKELDLYRSTGITDLGISAIAHGCPRLETINAAYCTSISDSALISLSKCPNLKTLEIRGCVLVTSLGLTVIAMSCRQLRRVDIKKCYNIDDSGMIQLAHFSQNLRQINLSYSSVTDVGLLSLASISSLQSFVLLHQQGLAPGGLAAALLTCGGLTKVKLHSSTRFMLPEQLIKHIEARGCVFEWRDKVFQAELDPKCWKLQVEDIMPHDFH* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2406 678 Gene3D Ribonuclease Inhibitor 149 255 IPR032675 -
Amo12g2406 678 SMART LRR_CC_2 79 104 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 363 388 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 106 131 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 568 592 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 158 182 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 261 286 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 132 157 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 312 336 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 209 233 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 491 516 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 389 414 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 542 567 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 517 541 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 465 490 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 183 208 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 415 439 IPR006553 -
Amo12g2406 678 SMART LRR_CC_2 337 362 IPR006553 -
Amo12g2406 678 Gene3D Ribonuclease Inhibitor 256 409 IPR032675 -
Amo12g2406 678 Gene3D Ribonuclease Inhibitor 410 646 IPR032675 -
Amo12g2406 678 SUPERFAMILY F-box domain 6 57 IPR036047 GO:0005515
Amo12g2406 678 PANTHER F-BOX/LRR-REPEAT PROTEIN 3 14 617 - -
Amo12g2406 678 PANTHER UNCHARACTERIZED 14 617 - -
Amo12g2406 678 Pfam Leucine Rich repeat 414 437 IPR001611 GO:0005515
Amo12g2406 678 Pfam Leucine Rich repeat 568 590 IPR001611 GO:0005515
Amo12g2406 678 Pfam Leucine Rich repeat 515 539 IPR001611 GO:0005515
Amo12g2406 678 Pfam Leucine Rich repeat 261 283 IPR001611 GO:0005515
Amo12g2406 678 Pfam Leucine Rich repeat 465 488 IPR001611 GO:0005515
Amo12g2406 678 Pfam Leucine Rich repeat 363 386 IPR001611 GO:0005515
Amo12g2406 678 SUPERFAMILY RNI-like 465 627 - -
Amo12g2406 678 Coils Coil 143 163 - -
Amo12g2406 678 Gene3D Ribonuclease Inhibitor 52 148 IPR032675 -
Amo12g2406 678 SUPERFAMILY RNI-like 72 284 - -
Amo12g2406 678 SUPERFAMILY RNI-like 259 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2406 Amo-Chr12 106527261 106531348 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2406 K10268 - gmx:100803617 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2406 12 106527261 106531348 Amo12g2406 12 106527261 106531348 ECH
Amo12g2406 12 106527261 106531348 Amo02g2645 02 82829501 82833514 hybridization