Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2295 ATGATGGCATGCCAAGAGTGGCCAGAACCAATAATAAGAGTCCAATCCTTAGCTGAAAGTGGCATAAATGCAATCCCTGAACGTTTCATCAAACCTCAATCCCAAAGGCCCAAAACACAATCCAATGTTGTCCCAACAAAACAAGGTTTTAATGATGTTGATGTTGAGAACATCAATATCCCGGTTATTGATTTTCAAGACCTGTATGGTGAAGACAAGAATCTAAAGGAACAAACACTTAAAAGGGTCTCTGAGGCTTGTAGGGAATGGGGTTTTTTCCAAGTGCTTAACCATGGTGTTAACCATGATTTGATGAAGAGTGCTAGAGAGGTTTGGCGTGAGTTCTTTCACCAACCAATTGAGGCTAAAGAAAAATATGCTAACTCACCACTTACCTATGAAGGCTATGGGAGTAGGTTGGGAATTAAAAAAGGTGCCATTTTGGATTGGAGTGACTACTTCTTTCTCCATTACATGCCTTCTTCTCTTAGGGACCAAGAAAAGTGGCCTTCTTTGCCAAACTCTTTAAGGGATGTGATTAATGAATATGGTGATGAAGTGGTTAAGCTAGGAGGAAGGGTTCTTGAATTGTTATCAATAAACCTTGGTTTGAAGGAGGATTTCTTGATGAATTCATTTGGTGGAGAGAGTGAGATTGGTGCATGCTTAAGGGTTAATTTCTACCCAAAATGCCCTCAACCAGACCTAACTCTTGGGCTCTCATCTCACTCAGACCCTGGGGGTATGACCATACTTTTACCAGATGAAAATGTTTCTGGTCTTCAAGTCCGCAGAGGAGAACATTGGATCACTGTCAAGCCTGTCCCAAATGCATTCATCATCAACATTGGTGACCAAATTCAGGTGCTAAGCAATGCAATGTACAAGAGTATAGAACATAGAGTAATTGTGAACTCAAACAAGGATAGAGTTTCATTGGCCTTCTTTTACAATCCAAGAAGTGATTTACTAATTCAACCTGCTAAGGAGCTTGTGAGTGAGGATAGGCCACCACTCTATCCACCAATGACATTTGATGAATATAGACTTTACATTAGGACCAAAGGACCATGTGGAAAATCTCAAGTTGAATCTTTGACTTCCCAAAAGTGA 1113 0.4043 MMACQEWPEPIIRVQSLAESGINAIPERFIKPQSQRPKTQSNVVPTKQGFNDVDVENINIPVIDFQDLYGEDKNLKEQTLKRVSEACREWGFFQVLNHGVNHDLMKSAREVWREFFHQPIEAKEKYANSPLTYEGYGSRLGIKKGAILDWSDYFFLHYMPSSLRDQEKWPSLPNSLRDVINEYGDEVVKLGGRVLELLSINLGLKEDFLMNSFGGESEIGACLRVNFYPKCPQPDLTLGLSSHSDPGGMTILLPDENVSGLQVRRGEHWITVKPVPNAFIINIGDQIQVLSNAMYKSIEHRVIVNSNKDRVSLAFFYNPRSDLLIQPAKELVSEDRPPLYPPMTFDEYRLYIRTKGPCGKSQVESLTSQK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2295 370 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 8 367 - -
Amo12g2295 370 Pfam 2OG-Fe(II) oxygenase superfamily 221 319 IPR044861 -
Amo12g2295 370 Gene3D - 10 354 IPR027443 -
Amo12g2295 370 SUPERFAMILY Clavaminate synthase-like 11 352 - -
Amo12g2295 370 Pfam non-haem dioxygenase in morphine synthesis N-terminal 60 171 IPR026992 -
Amo12g2295 370 PRINTS Isopenicillin N synthase signature 279 305 - -
Amo12g2295 370 PRINTS Isopenicillin N synthase signature 83 100 - -
Amo12g2295 370 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 218 319 IPR005123 -
Amo12g2295 370 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 8 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2295 Amo-Chr12 103676199 103681365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2295 14 366 Glycosyltransferase AT5G59530 33.889 5.13e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2295 - - gmx:100809662 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2295 12 103676199 103681365 Amo12g2295 12 103676199 103681365 ECH
Amo12g2295 12 103676199 103681365 Amo02g2528 02 79107889 79113072 hybridization