Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2280 ATGGGGGATTTCAACCTTGCTCTGTTGATCGTGGCGATCGTGGTGTGCGTGATCGTGTTCCTGGTGAACGTGTACCTTCTCGTGAACTACCAGCATCCTGATGACAAGAACCAGGCATACTTCCCCAAATTCGTCGTCGTTTTCGGTCTCTCTGTCGCCGCAATCTCCATTCTCATGCTCCCGGCAGATGTCGCGAACCGGCAGGCGTGTCGCCACGCGATCTACAATGGTGCGTGCAACCTCACGCTCCCGATGAAGACCTTGTGGCTCGTCGTGTACATCGTCGACGCCGTGCTTGTCTTCTTCGTTATTCCTTTCGCAATGTTCTACTATGAAGGCGACCAAGACAAGAGTATTGGCAAGAGGATTAGGAGTGCATTGTTGTGGATGGTGACCACTGCTATCGTGTGTGCTCTCATTCTGGGAATTTTGTACGGGCTTGTTGGGAAGGTGGACTTTACTGTCAGGCATCTCTCTTCTTCCACAACGTCATTTCCAAGTTCATGGAGCCTAAGTAACAGTCAACAATGCCTTGGAAATGGTGCCCGTCAGTGTTCTGCATATTTGGCTAATCCTTCATCAGAGAAAACGTGGACCATGCGTACTACCTTCCCTGAATATGTTGTTGCTCTTGCTACTATTGTTGGTTCTGTGCTTTTTGCTATATTTGGTGGTGTTGGCATTGCCTGTCTTCCATTAGGACTTATATTTTCATTTATTCGGCGCCCAAAGGCTGTTATCACTCGTTCACAATATATCAAGGAAGCAACTGAGCTGGGCAAGAAAGCAAGAGAACTGAAGAAAGCAGCTGAGTCACTTCATCAAGAAGAAAGAAGTGGTGCAAAGGGTAGGAAATTTCGCAAAAATGTGAAGTCAGTAGAAAAGGAATTGTTTCAACTAGAAGAAGATGTAAAGCTTCTTGAGGAGATGTACCCACAAGGCGAACAGGCTGAGACAACATGGGCGCTAACAGTTCTTGGATATCTGGGAAAGCTTGTTTTGGGAATTTTAGGGCTTATTGTTTCTGTGGCATGGGTTGCACATATCATCATCTATCTATTAATCGATCCTCCTCTATCTTCTTTCCTGAATGAAGTTTTCATCAAGCTGGATAGTATATGGGGTCTTCTGGGAACAGCCGCGTTTGCATTTTTCTGCTTCTACCTTTTGCTTGCTGTTATTGCTGGTGCAACAATGCTAGGGCTGAGACTAGTTTTCATTACTATACATCCTATGAAATGGGGAGCGACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATCCTTCTCTGCTCCATCAGTGTGATCCAGTTCTGTGCGACAGCATTTGCCTACTATGCCCAAGCAACTGCAGCACAGGAAATATTTGGCCACACCTTGGAGTCTCTGCGTGGAATTAAATATTTGTACAAGTACAACGTATTTCAGATCGCATTTGTTGTGTTGGCTGGATTGACATTTGTGTATTATCTTATCTTTGGATGGAGAAGAAGAAAGCCTAGTGGCAGGTTCCAATTGTCTTCATGA 1530 0.4529 MGDFNLALLIVAIVVCVIVFLVNVYLLVNYQHPDDKNQAYFPKFVVVFGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKTLWLVVYIVDAVLVFFVIPFAMFYYEGDQDKSIGKRIRSALLWMVTTAIVCALILGILYGLVGKVDFTVRHLSSSTTSFPSSWSLSNSQQCLGNGARQCSAYLANPSSEKTWTMRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAAESLHQEERSGAKGRKFRKNVKSVEKELFQLEEDVKLLEEMYPQGEQAETTWALTVLGYLGKLVLGILGLIVSVAWVAHIIIYLLIDPPLSSFLNEVFIKLDSIWGLLGTAAFAFFCFYLLLAVIAGATMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCATAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYLIFGWRRRKPSGRFQLSS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2280 509 Coils Coil 256 276 - -
Amo12g2280 509 PANTHER BNAC05G43630D PROTEIN 1 509 - -
Amo12g2280 509 Coils Coil 290 310 - -
Amo12g2280 509 Pfam LMBR1-like membrane protein 9 278 IPR006876 -
Amo12g2280 509 Pfam LMBR1-like membrane protein 271 487 IPR006876 -
Amo12g2280 509 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 1 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2280 Amo-Chr12 103214634 103220515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2280 K14617 - gmx:100816750 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2280 12 103214634 103220515 Amo02g2521 02 78996039 79001962 hybridization