Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2270 ATGGCAAACGACACTACCGTTGTGACGTGGCGCAAAATCCCCAGCCTCAAACTAACCTCCTTCAACAACGACGATGTCGTTTTACCTAGCCGCTCCAAACATCTCCGAAACGACGCCACACTCGCCTTTGCCGCCGGCGACGCCAATGGCAGTGGAATCAGCTGTAAATTCGCGTCCGTGTCGGTGGCAGAGACGAGATTCGACAGAGAATTCGCGCCTACGGCGTCTCAGCTCCTTAGACGCCCGCTCGCTGTGGTGGCGCTCGTTCCAAAGGATGGCGCGCTGTTTCTCGCCGGAGCTATCGCCGGCGCTGCCGCGAAGACCGTCACGGCGCCTCTCGACCGTATCAAGATCCTCATGCAGACGCATGGAGTGATAGCCGGTAAAGCAAGTGCAAAGAAAGCGATTAGTTTGATTGAGGCTATAACAGTTATAGGGAAGGAAGAAGGAATTAAAGGTTATTGGAAGGGCAATCTCCCCCAGGTTATTCGGGTTATACCTTATAGTGCTGTCCAGCTTTTTGCTTATGAAACTTATAAGAAAATTTTTAGTGGCAAGGATGGTAAGCTCTCTGTTCTGGGGAGACTTGCAGCTGGTGCTTTTGCTGGCATGACATCAACTTTTGTTACTTATCCATTAGATGTCCTGAGATTACGATTAGCTGTTGAGCCTGGTTATCGAACAATGTCAGAGGTTGCATTGAGCATGCTAAGAGAGGAAGGGTTTGCATCTTTCTACTATGGTCTTGGACCTTCTCTTATTGGAATAGCTCCTTATATTGCAGTTAACTTCTGTGTTTTTGACTTATTAAAGAAGTCATTGCCAGAGAAATATCAAAAAAGAACTGAAACATCTCTACTAACTGCGGTGCTTTCAGCATCTCTGGCCACACTTACATGTTATCCTCTTGACACTGTACGAAGACAGATGCAATTGAAGGGTACACCATATAAGACTGTATTAGATGCCATTTCAGGTATTGTGGCACGGGATGGATTTATTGGCTTGTATCGAGGATTTGTGCCCAATGCTTTGAAAAACTTACCAAACAGCAGCATCAGGCTTACCACATATGACATTGTCAAAAGGCTAATTGCATCTAGTGAGAAAGAATTCCAAACAATTACAGAGGAAAACCGCAACAAACAAATGAAACAATAG 1161 0.4599 MANDTTVVTWRKIPSLKLTSFNNDDVVLPSRSKHLRNDATLAFAAGDANGSGISCKFASVSVAETRFDREFAPTASQLLRRPLAVVALVPKDGALFLAGAIAGAAAKTVTAPLDRIKILMQTHGVIAGKASAKKAISLIEAITVIGKEEGIKGYWKGNLPQVIRVIPYSAVQLFAYETYKKIFSGKDGKLSVLGRLAAGAFAGMTSTFVTYPLDVLRLRLAVEPGYRTMSEVALSMLREEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLLTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVARDGFIGLYRGFVPNALKNLPNSSIRLTTYDIVKRLIASSEKEFQTITEENRNKQMKQ* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2270 386 SUPERFAMILY Mitochondrial carrier 95 360 IPR023395 -
Amo12g2270 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 280 364 IPR018108 -
Amo12g2270 386 PANTHER ADP/ATP CARRIER PROTEIN 5 377 - -
Amo12g2270 386 PANTHER SOLUTE CARRIER FAMILY 25 5 377 - -
Amo12g2270 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 190 273 IPR018108 -
Amo12g2270 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 90 182 IPR018108 -
Amo12g2270 386 Pfam Mitochondrial carrier protein 284 367 IPR018108 -
Amo12g2270 386 Pfam Mitochondrial carrier protein 189 276 IPR018108 -
Amo12g2270 386 Pfam Mitochondrial carrier protein 96 185 IPR018108 -
Amo12g2270 386 PRINTS Mitochondrial carrier protein signature 95 108 IPR002067 GO:0055085
Amo12g2270 386 PRINTS Mitochondrial carrier protein signature 108 122 IPR002067 GO:0055085
Amo12g2270 386 PRINTS Mitochondrial carrier protein signature 157 177 IPR002067 GO:0055085
Amo12g2270 386 PRINTS Mitochondrial carrier protein signature 205 223 IPR002067 GO:0055085
Amo12g2270 386 PRINTS Mitochondrial carrier protein signature 246 264 IPR002067 GO:0055085
Amo12g2270 386 PRINTS Mitochondrial carrier protein signature 289 311 IPR002067 GO:0055085
Amo12g2270 386 Gene3D Mitochondrial carrier domain 94 365 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2270 Amo-Chr12 102962351 102965920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2270 1 386 Organic Solute Cotransporters AT3G51870 67.949 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2270 K14684 - gmx:100796878 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2270 12 102962351 102965920 Amo12g2270 12 102962351 102965920 ECH